Search Results - "de Been, Mark"

Genomics and pathotypes of the many faces of Escherichia coli by Geurtsen, Jeroen, de Been, Mark, Weerdenburg, Eveline, Zomer, Aldert, McNally, Alan, Poolman, Jan

“…Abstract Escherichia coli is the most researched microbial organism in the world. Its varied impact on human health, consisting of commensalism,…”
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Core Genome Multilocus Sequence Typing Scheme for High- Resolution Typing of Enterococcus faecium by de Been, Mark, Pinholt, Mette, Top, Janetta, Bletz, Stefan, Mellmann, Alexander, van Schaik, Willem, Brouwer, Ellen, Rogers, Malbert, Kraat, Yvette, Bonten, Marc, Corander, Jukka, Westh, Henrik, Harmsen, Dag, Willems, Rob J L

“…Enterococcus faecium, a common inhabitant of the human gut, has emerged in the last 2 decades as an important multidrug-resistant nosocomial pathogen. Since…”
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Faecal Metaproteomic Analysis Reveals a Personalized and Stable Functional Microbiome and Limited Effects of a Probiotic Intervention in Adults by Kolmeder, Carolin A, Salojärvi, Jarkko, Ritari, Jarmo, de Been, Mark, Raes, Jeroen, Falony, Gwen, Vieira-Silva, Sara, Kekkonen, Riina A, Corthals, Garry L, Palva, Airi, Salonen, Anne, de Vos, Willem M

“…Recent metagenomic studies have demonstrated that the overall functional potential of the intestinal microbiome is rather conserved between healthy…”
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Within-Host Evolution of the Dutch High-Prevalent Pseudomonas aeruginosa Clone ST406 during Chronic Colonization of a Patient with Cystic Fibrosis by van Mansfeld, Rosa, de Been, Mark, Paganelli, Fernanda, Yang, Lei, Bonten, Marc, Willems, Rob

“…This study investigates adaptation of ST406, a prevalent P. aeruginosa clone, present in 15% of chronically infected cystic fibrosis (CF) patients in the…”
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Genome-Wide Detection and Analysis of Cell Wall-Bound Proteins with LPxTG-Like Sorting Motifs by BOEKHORST, Jos, DE BEEN, Mark W. H. J, KLEEREBEZEM, Michiel, SIEZEN, Roland J

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Dissemination of cephalosporin resistance genes between Escherichia coli strains from farm animals and humans by specific plasmid lineages by de Been, Mark, Lanza, Val F, de Toro, María, Scharringa, Jelle, Dohmen, Wietske, Du, Yu, Hu, Juan, Lei, Ying, Li, Ning, Tooming-Klunderud, Ave, Heederik, Dick J J, Fluit, Ad C, Bonten, Marc J M, Willems, Rob J L, de la Cruz, Fernando, van Schaik, Willem

“…Third-generation cephalosporins are a class of β-lactam antibiotics that are often used for the treatment of human infections caused by Gram-negative bacteria,…”
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Comparative metaproteomics and diversity analysis of human intestinal microbiota testifies for its temporal stability and expression of core functions by Kolmeder, Carolin A, de Been, Mark, Nikkilä, Janne, Ritamo, Ilja, Mättö, Jaana, Valmu, Leena, Salojärvi, Jarkko, Palva, Airi, Salonen, Anne, de Vos, Willem M

“…The human intestinal tract is colonized by microbial communities that show a subject-specific composition and a high-level temporal stability in healthy…”
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RNA-seq and Tn-seq reveal fitness determinants of vancomycin-resistant Enterococcus faecium during growth in human serum by Zhang, Xinglin, de Maat, Vincent, Guzmán Prieto, Ana M, Prajsnar, Tomasz K, Bayjanov, Jumamurat R, de Been, Mark, Rogers, Malbert R C, Bonten, Marc J M, Mesnage, Stéphane, Willems, Rob J L, van Schaik, Willem

“…The Gram-positive bacterium Enterococcus faecium is a commensal of the human gastrointestinal tract and a frequent cause of bloodstream infections in…”
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An iterative workflow for mining the human intestinal metaproteome by Rooijers, K, Kolmeder, C, Juste, C, Doré, J, Been, M. de, Boeren, S, Galan, P, Vos, W.M. de, Schaap, P.J, Beauvallet, C

“…Peptide spectrum matching (PSM) is the standard method in shotgun proteomics data analysis. It relies on the availability of an accurate and complete sample…”
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Directional gene flow and ecological separation in Yersinia enterocolitica by Reuter, Sandra, Corander, Jukka, de Been, Mark, Harris, Simon, Cheng, Lu, Hall, Miquette, Thomson, Nicholas R, McNally, Alan

“…is a common cause of food-borne gastroenteritis worldwide. Recent work defining the phylogeny of the genus subdivided into six distinct phylogroups. Here, we…”
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A multicomponent sugar phosphate sensor system specifically induced in Bacillus cereus during infection of the insect gut by Song, Fuping, Peng, Qi, Brillard, Julien, Buisson, Christophe, Been, Mark, Abee, Tjakko, Broussolle, Véronique, Huang, Dafang, Zhang, Jie, Lereclus, Didier, Nielsen‐LeRoux, Christina

“…ABSTRACT Using a previously developed Bacillus cereus in vivo expression technology (IVET) promoter trap system, we showed that spsA, a gene of unknown…”
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Generation of a 3D indexed Petunia insertion database for reverse genetics by Vandenbussche, Michiel, Janssen, Antoine, Zethof, Jan, Van Orsouw, Nathalie, Peters, Janny, Van Eijk, Michiel J.T., Rijpkema, Anneke S., Schneiders, Harrie, Santhanam, Parthasarathy, De Been, Mark, Van Tunen, Arjen, Gerats, Tom

“…Summary BLAST searchable databases containing insertion flanking sequences have revolutionized reverse genetics in plant research. The development of such…”
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Silencing of the pollen-specific gene NTP303 and its family members in tobacco affects in vivo pollen tube growth and results in male sterile plants by Groot, P. de, Weterings, K, Been, M. de, Wittink, F, Hulzink, R, Custers, J, Herpen, M. van, Wullems, G

“…In seed plants, successful fertilization requires correct regulation of pollen tube growth. At germination and during growth, the pollen tube interacts with…”
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Recent recombination events in the core genome are associated with adaptive evolution in Enterococcus faecium by de Been, Mark, van Schaik, Willem, Cheng, Lu, Corander, Jukka, Willems, Rob J

“…Reasons for the rising clinical impact of the bacterium Enterococcus faecium include the species' rapid acquisition of adaptive genetic elements. Here, we…”
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Sequence-Based Epidemiology of an OXA-48 Plasmid during a Hospital Outbreak by Hidalgo, Laura, de Been, Mark, Rogers, Malbert R. C., Schürch, Anita C., Scharringa, Jelle, van der Zee, Anneke, Bonten, Marc J. M., Fluit, Ad C.

“…A large OXA-48 outbreak in The Netherlands involved the spread of OXA-48-producing Enterobacteriaceae among at least 118 patients, suggesting horizontal…”
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Sequence-based epidemiology of an OXA-48 plasmid during a hospital outbreak by Hidalgo, Laura, de Been, Mark, Rogers, Malbert R C, Schürch, Anita C, Scharringa, Jelle, van der Zee, Anneke, Bonten, Marc J M, Fluit, Ad C

“…A large OXA-48 outbreak in the Netherlands involved the spread of OXA-48producing Enterobacteriaceae among at least 118 patients, suggesting horizontal…”
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Effects of selective digestive decontamination (SDD) on the gut resistome by Buelow, Elena, Gonzalez, Teresita Bello, Versluis, Dennis, Oostdijk, Evelien A N, Ogilvie, Lesley A, van Mourik, Maaike S M, Oosterink, Els, van Passel, Mark W J, Smidt, Hauke, D'Andrea, Marco Maria, de Been, Mark, Jones, Brian V, Willems, Rob J L, Bonten, Marc J M, van Schaik, Willem

“…Selective digestive decontamination (SDD) is an infection prevention measure for critically ill patients in intensive care units (ICUs) that aims to eradicate…”
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Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis by Méric, Guillaume, Miragaia, Maria, de Been, Mark, Yahara, Koji, Pascoe, Ben, Mageiros, Leonardos, Mikhail, Jane, Harris, Llinos G, Wilkinson, Thomas S, Rolo, Joana, Lamble, Sarah, Bray, James E, Jolley, Keith A, Hanage, William P, Bowden, Rory, Maiden, Martin C J, Mack, Dietrich, de Lencastre, Hermínia, Feil, Edward J, Corander, Jukka, Sheppard, Samuel K

“…The opportunistic pathogens Staphylococcus aureus and Staphylococcus epidermidis represent major causes of severe nosocomial infection, and are associated with…”
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Identification of a Genetic Determinant in Clinical Enterococcus faecium Strains That Contributes to Intestinal Colonization During Antibiotic Treatment by Zhang, Xinglin, Top, Janetta, de Been, Mark, Bierschenk, Damien, Rogers, Malbert, Leendertse, Masja, Bonten, Marc J. M., van der Poll, Tom, Willems, Rob J. L., van Schaik, Willem

“…Intestinal colonization by antibiotic-resistant Enterococcus faecium is the first step in a process that can lead to infections in hospitalized patients. By…”
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The salivary scavenger and agglutinin in early life: diverse roles in amniotic fluid and in the infant intestine by Reichhardt, Martin Parnov, Jarva, Hanna, de Been, Mark, Rodriguez, Juan Miguel, Jimenez Quintana, Esther, Loimaranta, Vuokko, de Vos, Willem Meindert, Meri, Seppo

“…The salivary scavenger and agglutinin (SALSA), also known as gp340 and dmbt1, is an antimicrobial and inflammation-regulating molecule located at the mucosal…”
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