Search Results - "d'Eustachio, Peter"

Reactome graph database: Efficient access to complex pathway data by Fabregat, Antonio, Korninger, Florian, Viteri, Guilherme, Sidiropoulos, Konstantinos, Marin-Garcia, Pablo, Ping, Peipei, Wu, Guanming, Stein, Lincoln, D'Eustachio, Peter, Hermjakob, Henning

“…Reactome is a free, open-source, open-data, curated and peer-reviewed knowledgebase of biomolecular pathways. One of its main priorities is to provide easy and…”
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Reactome pathway analysis: a high-performance in-memory approach by Fabregat, Antonio, Sidiropoulos, Konstantinos, Viteri, Guilherme, Forner, Oscar, Marin-Garcia, Pablo, Arnau, Vicente, D'Eustachio, Peter, Stein, Lincoln, Hermjakob, Henning

“…Reactome aims to provide bioinformatics tools for visualisation, interpretation and analysis of pathway knowledge to support basic research, genome analysis,…”
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The reactome pathway knowledgebase 2022 by Gillespie, Marc, Jassal, Bijay, Stephan, Ralf, Milacic, Marija, Rothfels, Karen, Senff-Ribeiro, Andrea, Griss, Johannes, Sevilla, Cristoffer, Matthews, Lisa, Gong, Chuqiao, Deng, Chuan, Varusai, Thawfeek, Ragueneau, Eliot, Haider, Yusra, May, Bruce, Shamovsky, Veronica, Weiser, Joel, Brunson, Timothy, Sanati, Nasim, Beckman, Liam, Shao, Xiang, Fabregat, Antonio, Sidiropoulos, Konstantinos, Murillo, Julieth, Viteri, Guilherme, Cook, Justin, Shorser, Solomon, Bader, Gary, Demir, Emek, Sander, Chris, Haw, Robin, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

“…Abstract The Reactome Knowledgebase (https://reactome.org), an Elixir core resource, provides manually curated molecular details across a broad range of…”
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Reactome knowledgebase of human biological pathways and processes by D'Eustachio, Peter

“…The Reactome Knowledgebase is an online, manually curated resource that provides an integrated view of the molecular details of human biological processes that…”
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Reactome diagram viewer: data structures and strategies to boost performance by Fabregat, Antonio, Sidiropoulos, Konstantinos, Viteri, Guilherme, Marin-Garcia, Pablo, Ping, Peipei, Stein, Lincoln, D'Eustachio, Peter, Hermjakob, Henning

“…Abstract Motivation Reactome is a free, open-source, open-data, curated and peer-reviewed knowledgebase of biomolecular pathways. For web-based pathway…”
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The Reactome Pathway Knowledgebase by Fabregat, Antonio, Jupe, Steven, Matthews, Lisa, Sidiropoulos, Konstantinos, Gillespie, Marc, Garapati, Phani, Haw, Robin, Jassal, Bijay, Korninger, Florian, May, Bruce, Milacic, Marija, Roca, Corina Duenas, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Viteri, Guilherme, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter

“…Abstract The Reactome Knowledgebase (https://reactome.org) provides molecular details of signal transduction, transport, DNA replication, metabolism, and other…”
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Plant Reactome Knowledgebase: empowering plant pathway exploration and OMICS data analysis by Gupta, Parul, Elser, Justin, Hooks, Elizabeth, D’Eustachio, Peter, Jaiswal, Pankaj, Naithani, Sushma

“…Abstract Plant Reactome (https://plantreactome.gramene.org) is a freely accessible, comprehensive plant pathway knowledgebase. It provides curated…”
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The Reactome Pathway Knowledgebase 2024 by Milacic, Marija, Beavers, Deidre, Conley, Patrick, Gong, Chuqiao, Gillespie, Marc, Griss, Johannes, Haw, Robin, Jassal, Bijay, Matthews, Lisa, May, Bruce, Petryszak, Robert, Ragueneau, Eliot, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Stephan, Ralf, Tiwari, Krishna, Varusai, Thawfeek, Weiser, Joel, Wright, Adam, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

“…Abstract The Reactome Knowledgebase (https://reactome.org), an Elixir and GCBR core biological data resource, provides manually curated molecular details of a…”
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Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways by Hill, David P, Drabkin, Harold J, Smith, Cynthia L, Van Auken, Kimberly M, D’Eustachio, Peter

“…Abstract Gene inactivation can affect the process(es) in which that gene acts and causally downstream ones, yielding diverse mutant phenotypes. Identifying the…”
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Annotating cancer variants and anti-cancer therapeutics in reactome by Milacic, Marija, Haw, Robin, Rothfels, Karen, Wu, Guanming, Croft, David, Hermjakob, Henning, D'Eustachio, Peter, Stein, Lincoln

“…Reactome describes biological pathways as chemical reactions that closely mirror the actual physical interactions that occur in the cell. Recent extensions of…”
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Gramene 2021: harnessing the power of comparative genomics and pathways for plant research by Tello-Ruiz, Marcela K, Naithani, Sushma, Gupta, Parul, Olson, Andrew, Wei, Sharon, Preece, Justin, Jiao, Yinping, Wang, Bo, Chougule, Kapeel, Garg, Priyanka, Elser, Justin, Kumari, Sunita, Kumar, Vivek, Contreras-Moreira, Bruno, Naamati, Guy, George, Nancy, Cook, Justin, Bolser, Daniel, D’Eustachio, Peter, Stein, Lincoln D, Gupta, Amit, Xu, Weijia, Regala, Jennifer, Papatheodorou, Irene, Kersey, Paul J, Flicek, Paul, Taylor, Crispin, Jaiswal, Pankaj, Ware, Doreen

“…Abstract Gramene (http://www.gramene.org), a knowledgebase founded on comparative functional analyses of genomic and pathway data for model plants and major…”
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Plant Reactome: a knowledgebase and resource for comparative pathway analysis by Naithani, Sushma, Gupta, Parul, Preece, Justin, D’Eustachio, Peter, Elser, Justin L, Garg, Priyanka, Dikeman, Daemon A, Kiff, Jason, Cook, Justin, Olson, Andrew, Wei, Sharon, Tello-Ruiz, Marcela K, Mundo, Antonio Fabregat, Munoz-Pomer, Alfonso, Mohammed, Suhaib, Cheng, Tiejun, Bolton, Evan, Papatheodorou, Irene, Stein, Lincoln, Ware, Doreen, Jaiswal, Pankaj

“…Abstract Plant Reactome (https://plantreactome.gramene.org) is an open-source, comparative plant pathway knowledgebase of the Gramene project. It uses Oryza…”
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Gramene 2018: unifying comparative genomics and pathway resources for plant research by Tello-Ruiz, Marcela K, Naithani, Sushma, Stein, Joshua C, Gupta, Parul, Campbell, Michael, Olson, Andrew, Wei, Sharon, Preece, Justin, Geniza, Matthew J, Jiao, Yinping, Lee, Young Koung, Wang, Bo, Mulvaney, Joseph, Chougule, Kapeel, Elser, Justin, Al-Bader, Noor, Kumari, Sunita, Thomason, James, Kumar, Vivek, Bolser, Daniel M, Naamati, Guy, Tapanari, Electra, Fonseca, Nuno, Huerta, Laura, Iqbal, Haider, Keays, Maria, Munoz-Pomer Fuentes, Alfonso, Tang, Amy, Fabregat, Antonio, D'Eustachio, Peter, Weiser, Joel, Stein, Lincoln D, Petryszak, Robert, Papatheodorou, Irene, Kersey, Paul J, Lockhart, Patti, Taylor, Crispin, Jaiswal, Pankaj, Ware, Doreen

“…Abstract Gramene (http://www.gramene.org) is a knowledgebase for comparative functional analysis in major crops and model plant species. The current release,…”
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Reactome: a database of reactions, pathways and biological processes by Croft, David, O'Kelly, Gavin, Wu, Guanming, Haw, Robin, Gillespie, Marc, Matthews, Lisa, Caudy, Michael, Garapati, Phani, Gopinath, Gopal, Jassal, Bijay, Jupe, Steven, Kalatskaya, Irina, Mahajan, Shahana, May, Bruce, Ndegwa, Nelson, Schmidt, Esther, Shamovsky, Veronica, Yung, Christina, Birney, Ewan, Hermjakob, Henning, D'Eustachio, Peter, Stein, Lincoln

“…Reactome (http://www.reactome.org) is a collaboration among groups at the Ontario Institute for Cancer Research, Cold Spring Harbor Laboratory, New York…”
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Gramene 2013: comparative plant genomics resources by Monaco, Marcela K, Stein, Joshua, Naithani, Sushma, Wei, Sharon, Dharmawardhana, Palitha, Kumari, Sunita, Amarasinghe, Vindhya, Youens-Clark, Ken, Thomason, James, Preece, Justin, Pasternak, Shiran, Olson, Andrew, Jiao, Yinping, Lu, Zhenyuan, Bolser, Dan, Kerhornou, Arnaud, Staines, Dan, Walts, Brandon, Wu, Guanming, D'Eustachio, Peter, Haw, Robin, Croft, David, Kersey, Paul J, Stein, Lincoln, Jaiswal, Pankaj, Ware, Doreen

“…Gramene (http://www.gramene.org) is a curated online resource for comparative functional genomics in crops and model plant species, currently hosting 27 fully…”
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Plant Reactome and PubChem: The Plant Pathway and (Bio)Chemical Entity Knowledgebases by Gupta, Parul, Naithani, Sushma, Preece, Justin, Kim, Sunghwan, Cheng, Tiejun, D'Eustachio, Peter, Elser, Justin, Bolton, Evan E, Jaiswal, Pankaj

“…Plant Reactome (https://plantreactome.gramene.org) and PubChem ( https://pubchem.ncbi.nlm.nih.gov ) are two reference data portals and resources for curated…”
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Reactome and the Gene Ontology: digital convergence of data resources by Good, Benjamin M, Van Auken, Kimberly, Hill, David P, Mi, Huaiyu, Carbon, Seth, Balhoff, James P, Albou, Laurent-Philippe, Thomas, Paul D, Mungall, Christopher J, Blake, Judith A, D’Eustachio, Peter

“…Abstract Motivation Gene Ontology Causal Activity Models (GO-CAMs) assemble individual associations of gene products with cellular components, molecular…”
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Using Reactome to build an autophagy mechanism knowledgebase by Varusai, Thawfeek Mohamed, Jupe, Steven, Sevilla, Cristoffer, Matthews, Lisa, Gillespie, Marc, Stein, Lincoln, Wu, Guanming, D'Eustachio, Peter, Metzakopian, Emmanouil, Hermjakob, Henning

“…The 21st century has revealed much about the fundamental cellular process of autophagy. Autophagy controls the catabolism and recycling of various cellular…”
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Biocuration of a Transcription Factors Network Involved in Submergence Tolerance during Seed Germination and Coleoptile Elongation in Rice ( Oryza sativa ) by Naithani, Sushma, Mohanty, Bijayalaxmi, Elser, Justin, D'Eustachio, Peter, Jaiswal, Pankaj

“…Modeling biological processes and genetic-regulatory networks using in silico approaches provides a valuable framework for understanding how genes and…”
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Reactome: a knowledge base of biologic pathways and processes by Vastrik, Imre, D'Eustachio, Peter, Schmidt, Esther, Joshi-Tope, Geeta, Gopinath, Gopal, Croft, David, de Bono, Bernard, Gillespie, Marc, Jassal, Bijay, Lewis, Suzanna, Matthews, Lisa, Wu, Guanming, Birney, Ewan, Stein, Lincoln

“…Reactome http://www.reactome.org, an online curated resource for human pathway data, provides infrastructure for computation across the biologic reaction…”
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