Search Results - "Zwart, H"

Port-Hamiltonian modelling of nonlocal longitudinal vibrations in a viscoelastic nanorod by Heidari, Hanif, Zwart, H.

“…Analysis of nonlocal axial vibration in a nanorod is a crucial subject in science and engineering because of its wide applications in nanoelectromechanical…”
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Iterative phasing for fluctuation X-ray scattering by Donatelli, Jeffrey J., Zwart, Peter H., Sethian, James A.

“…Fluctuation X-ray scattering (FXS) is an extension of small- and wide-angle X-ray scattering in which the X-ray snapshots are taken below rotational diffusion…”
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De novo design of protein homo-oligomers with modular hydrogen-bond network–mediated specificity by Boyken, Scott E., Chen, Zibo, Groves, Benjamin, Langan, Robert A., Oberdorfer, Gustav, Ford, Alex, Gilmore, Jason M., Xu, Chunfu, DiMaio, Frank, Pereira, Jose Henrique, Sankaran, Banumathi, Seelig, Georg, Zwart, Peter H., Baker, David

“…In nature, structural specificity in DNA and proteins is encoded differently: In DNA, specificity arises from modular hydrogen bonds in the core of the double…”
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A New Generation of Crystallographic Validation Tools for the Protein Data Bank by Read, Randy J., Adams, Paul D., Arendall, W. Bryan, Brunger, Axel T., Emsley, Paul, Joosten, Robbie P., Kleywegt, Gerard J., Krissinel, Eugene B., Lütteke, Thomas, Otwinowski, Zbyszek, Perrakis, Anastassis, Richardson, Jane S., Sheffler, William H., Smith, Janet L., Tickle, Ian J., Vriend, Gert, Zwart, Peter H.

“…This report presents the conclusions of the X-ray Validation Task Force of the worldwide Protein Data Bank (PDB). The PDB has expanded massively since current…”
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PHENIX: a comprehensive Python-based system for macromolecular structure solution by Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Davis, Ian W., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Kapral, Gary J., Grosse-Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert, Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.

“…Macromolecular X‐ray crystallography is routinely applied to understand biological processes at a molecular level. However, significant time and effort are…”
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Minimally disruptive optical control of protein tyrosine phosphatase 1B by Hongdusit, Akarawin, Zwart, Peter H., Sankaran, Banumathi, Fox, Jerome M.

“…Protein tyrosine phosphatases regulate a myriad of essential subcellular signaling events, yet they remain difficult to study in their native biophysical…”
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Reconstruction from limited single-particle diffraction data via simultaneous determination of state, orientation, intensity, and phase by Donatelli, Jeffrey J., Sethian, James A., Zwart, Peter H.

“…Free-electron lasers now have the ability to collect X-ray diffraction patterns from individual molecules; however, each sample is delivered at unknown…”
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Tailored design of protein nanoparticle scaffolds for multivalent presentation of viral glycoprotein antigens by Ueda, George, Antanasijevic, Aleksandar, Fallas, Jorge A, Sheffler, William, Copps, Jeffrey, Ellis, Daniel, Hutchinson, Geoffrey B, Moyer, Adam, Yasmeen, Anila, Tsybovsky, Yaroslav, Park, Young-Jun, Bick, Matthew J, Sankaran, Banumathi, Gillespie, Rebecca A, Brouwer, Philip Jm, Zwart, Peter H, Veesler, David, Kanekiyo, Masaru, Graham, Barney S, Sanders, Rogier W, Moore, John P, Klasse, Per Johan, Ward, Andrew B, King, Neil P, Baker, David

“…Multivalent presentation of viral glycoproteins can substantially increase the elicitation of antigen-specific antibodies. To enable a new generation of…”
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LPMLE3: A novel 1‐D approach to study water flow in streambeds using heat as a tracer by Schneidewind, U., van Berkel, M., Anibas, C., Vandersteen, G., Schmidt, C., Joris, I., Seuntjens, P., Batelaan, O., Zwart, H. J.

“…We introduce LPMLE3, a new 1‐D approach to quantify vertical water flow components at streambeds using temperature data collected in different depths. LPMLE3…”
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The Phenix software for automated determination of macromolecular structures by Adams, Paul D., Afonine, Pavel V., Bunkóczi, Gábor, Chen, Vincent B., Echols, Nathaniel, Headd, Jeffrey J., Hung, Li-Wei, Jain, Swati, Kapral, Gary J., Grosse Kunstleve, Ralf W., McCoy, Airlie J., Moriarty, Nigel W., Oeffner, Robert D., Read, Randy J., Richardson, David C., Richardson, Jane S., Terwilliger, Thomas C., Zwart, Peter H.

“…► X-ray crystallography is a critical tool in the study of biological systems. ► Significant time and effort are required to determine and optimize many…”
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Structural Determinants Underlying Photoprotection in the Photoactive Orange Carotenoid Protein of Cyanobacteria by Wilson, Adjele, Kinney, James N., Zwart, Petrus H., Punginelli, Claire, D'Haene, Sandrine, Perreau, François, Klein, Michael G., Kirilovsky, Diana, Kerfeld, Cheryl A.

“…The photoprotective processes of photosynthetic organisms involve the dissipation of excess absorbed light energy as heat. Photoprotection in cyanobacteria is…”
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Ab initio structure determination from experimental fluctuation X-ray scattering data by Pande, Kanupriya, Donatelli, Jeffrey J., Malmerberg, Erik, Foucar, Lutz, Bostedt, Christoph, Schlichting, Ilme, Zwart, Petrus H.

“…Fluctuation X-ray scattering (FXS) is an emerging experimental technique in which X-ray solution scattering data are collected from particles in solution using…”
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Port-Hamiltonian discontinuous Galerkin finite element methods by Kumar, Nishant, van der Vegt, J J W, Zwart, H J

“…A port-Hamiltonian (pH) system formulation is a geometrical notion used to formulate conservation laws for various physical systems. The distributed parameter…”
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Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses by Kurta, Ruslan P, Donatelli, Jeffrey J, Yoon, Chun Hong, Berntsen, Peter, Bielecki, Johan, Daurer, Benedikt J, DeMirci, Hasan, Fromme, Petra, Hantke, Max Felix, Maia, Filipe R N C, Munke, Anna, Nettelblad, Carl, Pande, Kanupriya, Reddy, Hemanth K N, Sellberg, Jonas A, Sierra, Raymond G, Svenda, Martin, van der Schot, Gijs, Vartanyants, Ivan A, Williams, Garth J, Xavier, P Lourdu, Aquila, Andrew, Zwart, Peter H, Mancuso, Adrian P

“…We use extremely bright and ultrashort pulses from an x-ray free-electron laser (XFEL) to measure correlations in x rays scattered from individual…”
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Suggestions to Improve the Comprehensibility of Current Definitions of Scientific Authorship for International Authors by Hosseini, Mohammad, Consoli, Luca, Zwart, H. A. E., van den Hoven, Mariette A.

“…Much has been said about the need for improving the current definitions of scientific authorship, but an aspect that is often overlooked is how to formulate…”
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The effects of work-related and individual factors on the Work Ability Index: a systematic review by van den Berg, T I J, Elders, L A M, de Zwart, B C H, Burdorf, A

“…This paper systematically reviews the scientific literature on the effects of individual and work-related factors on the Work Ability Index (WAI)Studies on…”
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A response to “Living with a fragmented body”: a qualitative study on perceptions about body changes after a spinal cord injury by Soloukey, S., Prins, A. W., Zwart, H., Slatman, J.

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Room temperature femtosecond X-ray diffraction of photosystem II microcrystals by Kern, Jan, Alonso-Mori, Roberto, Hellmich, Julia, Tran, Rosalie, Hattne, Johan, Laksmono, Hartawan, Glöckner, Carina, Echols, Nathaniel, Sierra, Raymond G, Sellberg, Jonas, Lassalle-Kaiser, Benedikt, Gildea, Richard J, Glatzel, Pieter, Grosse-Kunstleve, Ralf W, Latimer, Matthew J, McQueen, Trevor A, DiFiore, Dörte, Fry, Alan R, Messerschmidt, Marc, Miahnahri, Alan, Schafer, Donald W, Seibert, M. Marvin, Sokaras, Dimosthenis, Weng, Tsu-Chien, Zwart, Petrus H, White, William E, Adams, Paul D, Bogan, Michael J, Boutet, Sébastien, Williams, Garth J, Messinger, Johannes, Sauter, Nicholas K, Zouni, Athina, Bergmann, Uwe, Yano, Junko, Yachandra, Vittal K

“…Most of the dioxygen on earth is generated by the oxidation of water by photosystem II (PS II) using light from the sun. This light-driven, four-photon…”
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Determining pair distance distribution function from SAXS data using parametric functionals by Liu, Haiguang, Zwart, Peter H.

“…Small angle X-ray scattering (SAXS) experiments are widely applied in structural biology. The SAXS experiments yield one-dimensional profile that needs further…”
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High-intensity versus low-intensity resistance training in patients with knee osteoarthritis: A randomized controlled trial by de Zwart, Arjan H, Dekker, Joost, Roorda, Leo D, van der Esch, Martin, Lips, Paul, van Schoor, Natasja M, Heijboer, Annemiek C, Turkstra, Franktien, Gerritsen, Martijn, Häkkinen, Arja, Bennell, Kim, Steultjens, Martjin PM, Lems, Willem F, van der Leeden, Marike

“…Objectives To assess whether (i) high-intensity resistance training (RT) leads to increased muscle strength compared to low-intensity RT in patients with knee…”
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