Search Results - "Zumstein, Kristina"

Profiling of Accessible Chromatin Regions across Multiple Plant Species and Cell Types Reveals Common Gene Regulatory Principles and New Control Modules by Maher, Kelsey A., Bajic, Marko, Kajala, Kaisa, Reynoso, Mauricio, Pauluzzi, Germain, West, Donnelly A., Zumstein, Kristina, Woodhouse, Margaret, Bubb, Kerry, Dorrity, Michael W., Queitsch, Christine, Bailey-Serres, Julia, Sinha, Neelima, Brady, Siobhan M., Deal, Roger B.

“…The transcriptional regulatory structure of plant genomes remains poorly defined relative to animals. It is unclear how many cis-regulatory elements exist,…”
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Evolutionary flexibility in flooding response circuitry in angiosperms by Reynoso, Mauricio A, Kajala, Kaisa, Bajic, Marko, West, Donnelly A, Pauluzzi, Germain, Yao, Andrew I, Hatch, Kathryn, Zumstein, Kristina, Woodhouse, Margaret, Rodriguez-Medina, Joel, Sinha, Neelima, Brady, Siobhan M, Deal, Roger B, Bailey-Serres, Julia

“…Flooding due to extreme weather threatens crops and ecosystems. To understand variation in gene regulatory networks activated by submergence, we conducted a…”
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Leaf form diversification in an ornamental heirloom tomato results from alterations in two different HOMEOBOX genes by Nakayama, Hokuto, Rowland, Steven D., Cheng, Zizhang, Zumstein, Kristina, Kang, Julie, Kondo, Yohei, Sinha, Neelima R.

“…Domesticated plants display diverse phenotypic traits. However, the influence of breeding effort on this phenotypic diversity remains unknown. Here, we…”
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Leaf shape is a predictor of fruit quality and cultivar performance in tomato by Rowland, Steven D., Zumstein, Kristina, Nakayama, Hokuto, Cheng, Zizhang, Flores, Amber M., Chitwood, Daniel H., Maloof, Julin N., Sinha, Neelima R.

“…• Commercial tomato (Solanum lycopersicum) is one of the most widely grown vegetable crops worldwide. Heirloom tomatoes retain extensive genetic diversity and…”
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Heinz-resistant tomato cultivars exhibit a lignin-based resistance to field dodder (Cuscuta campestris) parasitism by Jhu, Min-Yao, Farhi, Moran, Wang, Li, Philbrook, Richard N, Belcher, Michael S, Nakayama, Hokuto, Zumstein, Kristina S, Rowland, Sarah D, Ron, Mily, Shih, Patrick M, Sinha, Neelima R

“…Cuscuta species (dodders) are agriculturally destructive, parasitic angiosperms. These parasitic plants use haustoria as physiological bridges to extract…”
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Investigating Host and Parasitic Plant Interaction by Tissue-Specific Gene Analyses on Tomato and Cuscuta campestris Interface at Three Haustorial Developmental Stages by Jhu, Min-Yao, Farhi, Moran, Wang, Li, Zumstein, Kristina, Sinha, Neelima R

“…Parasitic weeds cause billions of dollars in agricultural losses each year worldwide. ( ), one of the most widespread and destructive parasitic plants in the…”
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Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology by Chitwood, Daniel H., Kumar, Ravi, Ranjan, Aashish, Pelletier, Julie M., Townsley, Brad T., Ichihashi, Yasunori, Martinez, Ciera C., Zumstein, Kristina, Harada, John J., Maloof, Julin N., Sinha, Neelima R.

“…Plants sense the foliar shade of competitors and alter their developmental programs through the shade-avoidance response. Internode and petiole elongation, and…”
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BrAD-seq: Breath Adapter Directional sequencing: a streamlined, ultra-simple and fast library preparation protocol for strand specific mRNA library construction by Townsley, Brad T, Covington, Michael F, Ichihashi, Yasunori, Zumstein, Kristina, Sinha, Neelima R

“…Next Generation Sequencing (NGS) is driving rapid advancement in biological understanding and RNA-sequencing (RNA-seq) has become an indispensable tool for…”
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The Major Qualitative Characteristics of Olive ( Olea europaea L.) Cultivated in Southwest China by Cheng, Zizhang, Zhan, Mingming, Yang, Zeshen, Zumstein, Kristina, Chen, Huaping, Huang, Qianming

“…Olive trees, originated from Mediterranean, have been cultivated in China for decades and show great adaption to local environment. However, research on this…”
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Transcriptomic analysis suggests a key role for SQUAMOSA PROMOTER BINDING PROTEIN LIKE, NAC and YUCCA genes in the heteroblastic development of the temperate rainforest tree Gevuina avellana (Proteaceae) by Ostria‐Gallardo, Enrique, Ranjan, Aashish, Chitwood, Daniel H, Kumar, Ravi, Townsley, Brad T, Ichihashi, Yasunori, Corcuera, Luis J, Sinha, Neelima R

“…Heteroblasty, the temporal development of the meristem, can produce diverse leaf shapes within a plant. Gevuina avellana, a tree from the South American…”
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De Novo Assembly and Characterization of the Transcriptome of the Parasitic Weed Dodder Identifies Genes Associated with Plant Parasitism by Ranjan, Aashish, Ichihashi, Yasunori, Farhi, Moran, Zumstein, Kristina, Townsley, Brad, David-Schwartz, Rakefet, Sinha, Neelima R.

“…Parasitic flowering plants are one of the most destructive agricultural pests and have major impact on crop yields throughout the world. Being dependent on…”
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Plant and animal PR1 family members inhibit programmed cell death and suppress bacterial pathogens in plant tissues by Lincoln, James E., Sanchez, Juan P., Zumstein, Kristina, Gilchrist, David G.

“…Summary A role for programmed cell death (PCD) has been established as the basis for plant–microbe interactions. A functional plant‐based cDNA library screen…”
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Hairy root transformation using Agrobacterium rhizogenes as a tool for exploring cell type-specific gene expression and function using tomato as a model by Ron, Mily, Kajala, Kaisa, Pauluzzi, Germain, Wang, Dongxue, Reynoso, Mauricio A, Zumstein, Kristina, Garcha, Jasmine, Winte, Sonja, Masson, Helen, Inagaki, Soichi, Federici, Fernán, Sinha, Neelima, Deal, Roger B, Bailey-Serres, Julia, Brady, Siobhan M

“…Agrobacterium rhizogenes (or Rhizobium rhizogenes) is able to transform plant genomes and induce the production of hairy roots. We describe the use of A…”
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eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato by Ranjan, Aashish, Budke, Jessica M., Rowland, Steven D., Chitwood, Daniel H., Kumar, Ravi, Carriedo, Leonela, Ichihashi, Yasunori, Zumstein, Kristina, Maloof, Julin N., Sinha, Neelima R.

“…Variation in gene expression, in addition to sequence polymorphisms, is known to influence developmental, physiological, and metabolic traits in plants…”
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Resolving Distinct Genetic Regulators of Tomato Leaf Shape within a Heteroblastic and Ontogenetic Context by Chitwood, Daniel H., Ranjan, Aashish, Kumar, Ravi, Ichihashi, Yasunori, Zumstein, Kristina, Headland, Lauren R., Ostria-Gallardo, Enrique, Aguilar-Martinez, José A., Bush, Susan, Carriedo, Leonela, Fulop, Daniel, Martinez, Ciera C., Peng, Jie, Maloof, Julin N., Sinha, Neelima R.

“…Leaf shape is mutable, changing in ways modulated by both development and environment within genotypes. A complete model of leaf phenotype would incorporate…”
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eQTL Regulating Transcript Levels Associated with Diverse Biological Processes in Tomato1[OPEN] by Ranjan, Aashish, Budke, Jessica M., Rowland, Steven D., Chitwood, Daniel H., Kumar, Ravi, Carriedo, Leonela, Ichihashi, Yasunori, Zumstein, Kristina, Maloof, Julin N., Sinha, Neelima R.

“…Genetic mapping and coexpression highlights hot spots regulating transcripts linked to diverse biological processes. Variation in gene expression, in addition…”
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De Novo Assembly and Characterization of the Transcriptome of the Parasitic Weed Dodder Identifies Genes Associated with Plant Parasitism1[C][W][OPEN] by Ranjan, Aashish, Ichihashi, Yasunori, Farhi, Moran, Zumstein, Kristina, Townsley, Brad, David-Schwartz, Rakefet, Sinha, Neelima R.

“…Transcriptional dynamics during parasitism in the parasitic weed Cuscuta pentagona reveals increased expression of genes encoding transporters and stimulus…”
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Light-Induced Indeterminacy Alters Shade-Avoiding Tomato Leaf Morphology1[OPEN] by Chitwood, Daniel H., Kumar, Ravi, Ranjan, Aashish, Pelletier, Julie M., Townsley, Brad T., Ichihashi, Yasunori, Martinez, Ciera C., Zumstein, Kristina, Harada, John J., Maloof, Julin N., Sinha, Neelima R.

“…Shade avoidance increases indeterminacy in the initiating leaf primordium, increasing leaf complexity and serration through a heteroblasty-independent…”
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Hairy Root Transformation Using Agrohacterium rhizogenes as a Tool for Exploring Cell Type-Specific Gene Expression and Function Using Tomato as a Model by Ron, Mily, Kajala, Kaisa, Pauluzzi, Germain, Wang, Dongxue, Reynoso, Mauricio A., Zumstein, Kristina, Garcha, Jasmine, Winte, Sonja, Masson, Helen, Inagaki, Soichi, Federici, Fernán, Sinha, Neelima, Deal, Roger B., Bailey-Serres, Julia, Brady, Siobhan M.

“…Agrobacterium rhizogenes (or Rhizobium rhizogenes) is able to transform plant genomes and induce the production of hairy roots. We describe the use of A…”
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Hairy Root Transformation Using Agrobacterium rhizogenes as a Tool for Exploring Cell Type-Specific Gene Expression and Function Using Tomato as a Model1[W][OPEN] by Ron, Mily, Kajala, Kaisa, Pauluzzi, Germain, Wang, Dongxue, Reynoso, Mauricio A., Zumstein, Kristina, Garcha, Jasmine, Winte, Sonja, Masson, Helen, Inagaki, Soichi, Federici, Fernán, Sinha, Neelima, Deal, Roger B., Bailey-Serres, Julia, Brady, Siobhan M.

“…Testing tomato gene expression with tagged nuclei and ribosomes and CRISPR/Cas9 genome editing shows conservation of SHORT-ROOT gene function . Agrobacterium…”
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