Search Results - "Zhang, Kam Y.J."

Pharmacophore modelling as a virtual screening tool for the discovery of small molecule protein-protein interaction inhibitors by Voet, Arnout, Zhang, Kam Y J

“…Pharmacophore searches have become a popular tool for virtual screening of libraries to identify novel active substances that can be potentially developed into…”
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Fragger: a protein fragment picker for structural queries [version 2; peer review: 2 approved] by Berenger, Francois, Simoncini, David, Voet, Arnout, Shrestha, Rojan, Zhang, Kam Y.J

“…Protein modeling and design activities often require querying the Protein Data Bank (PDB) with a structural fragment, possibly containing gaps. For some…”
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Fragger: a protein fragment picker for structural queries [version 1; peer review: 2 approved] by Berenger, Francois, Simoncini, David, Voet, Arnout, Shrestha, Rojan, Zhang, Kam Y.J

“…Protein modeling and design activities often require querying the Protein Data Bank (PDB) with a structural fragment, possibly containing gaps. For some…”
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Hierarchical virtual screening approaches in small molecule drug discovery by Kumar, Ashutosh, Zhang, Kam Y.J.

“…•Review of hierarchical virtual screening approaches is presented.•Hierarchical combination of ligand and structure-based methods is preferred over parallel…”
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Glu-108 is essential for subunit assembly and dimer stability of d-phosphoglycerate dehydrogenase from Entamoeba histolytica by Mishra, Vibhor, Kumar, Ashutosh, Ali, Vahab, Nozaki, Tomoyoshi, Zhang, Kam Y.J., Bhakuni, Vinod

“…The studies unequivocally show that the electrostatic interactions at the dimer interface play a crucial role in the stability of the protein and a complete…”
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Application of Shape Similarity in Pose Selection and Virtual Screening in CSARdock2014 Exercise by Kumar, Ashutosh, Zhang, Kam Y. J

“…To evaluate the applicability of shape similarity in docking-based pose selection and virtual screening, we participated in the CSARdock2014 benchmark exercise…”
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The Effect of F877L and T878A Mutations on Androgen Receptor Response to Enzalutamide by Prekovic, Stefan, van Royen, Martin E, Voet, Arnout R D, Geverts, Bart, Houtman, Rene, Melchers, Diana, Zhang, Kam Y J, Van den Broeck, Thomas, Smeets, Elien, Spans, Lien, Houtsmuller, Adriaan B, Joniau, Steven, Claessens, Frank, Helsen, Christine

“…Treatment-induced mutations in the ligand-binding domain of the androgen receptor (AR) are known to change antagonists into agonists. Recently, the F877L…”
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Targeting LIF/LIFR signaling in cancer by Viswanadhapalli, Suryavathi, Dileep, Kalarickal V., Zhang, Kam Y.J., Nair, Hareesh B., Vadlamudi, Ratna K.

“…Leukemia inhibitory factor (LIF), and its receptor (LIFR), are commonly over-expressed in many solid cancers and recent studies have implicated LIF/LIFR axis…”
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EC359: A First-in-Class Small-Molecule Inhibitor for Targeting Oncogenic LIFR Signaling in Triple-Negative Breast Cancer by Viswanadhapalli, Suryavathi, Luo, Yiliao, Sareddy, Gangadhara R, Santhamma, Bindu, Zhou, Mei, Li, Mengxing, Ma, Shihong, Sonavane, Rajni, Pratap, Uday P, Altwegg, Kristin A, Li, Xiaonan, Chang, Annabel, Chávez-Riveros, Alejandra, Dileep, Kalarickal V, Zhang, Kam Y J, Pan, Xinlei, Murali, Ramachandran, Bajda, Marek, Raj, Ganesh V, Brenner, Andrew J, Manthati, Vijaya, Rao, Manjeet K, Tekmal, Rajeshwar R, Nair, Hareesh B, Nickisch, Klaus J, Vadlamudi, Ratna K

“…Leukemia inhibitory factor receptor (LIFR) and its ligand LIF play a critical role in cancer progression, metastasis, stem cell maintenance, and therapy…”
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Identification of new SUMO activating enzyme 1 inhibitors using virtual screening and scaffold hopping by Kumar, Ashutosh, Ito, Akihiro, Hirohama, Mikako, Yoshida, Minoru, Zhang, Kam Y.J.

“…[Display omitted] Sumoylation involves the enzymatic conjugation of small ubiquitin-like modifier (SUMO) protein to their substrate proteins. Sumoylation is…”
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Advances in the development of SUMO specific protease (SENP) inhibitors by Kumar, Ashutosh, Zhang, Kam Y J

“…Sumoylation is a reversible post-translational modification that involves the covalent attachment of small ubiquitin-like modifier (SUMO) proteins to their…”
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Piperidine-4-carboxamide as a new scaffold for designing secretory glutaminyl cyclase inhibitors by Dileep, K.V., Sakai, Naoki, Ihara, Kentaro, Kato-Murayama, Miyuki, Nakata, Akiko, Ito, Akihiro, Sivaraman, D.M., Shin, Jay W., Yoshida, Minoru, Shirouzu, Mikako, Zhang, Kam Y.J.

“…Alzheimer's disease (AD), a common chronic neurodegenerative disease, has become a major public health concern. Despite years of research, therapeutics for AD…”
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An integrated protein structure fitness scoring approach for identifying native-like model structures by Kaushik, Rahul, Zhang, Kam Y.J.

“…[Display omitted] The structural information of a protein is pivotal to comprehend its functions, protein–protein and protein–ligand interactions. There is a…”
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Biomineralization of a Cadmium Chloride Nanocrystal by a Designed Symmetrical Protein by Voet, Arnout R. D., Noguchi, Hiroki, Addy, Christine, Zhang, Kam Y. J., Tame, Jeremy R. H.

“…We have engineered a metal‐binding site into the novel artificial β‐propeller protein Pizza. This new Pizza variant carries two nearly identical domains per…”
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Neuroprotective derivatives of tacrine that target NMDA receptor and acetyl cholinesterase – Design, synthesis and biological evaluation by Remya, Chandran, Dileep, K.V., Koti Reddy, Eeda, Mantosh, Kumar, Lakshmi, Kesavan, Sarah Jacob, Reena, Sajith, Ayyiliyath M., Jayadevi Variyar, E., Anwar, Shaik, Zhang, Kam Y.J., Sadasivan, C., Omkumar, R.V.

“…[Display omitted] The complex and multifactorial nature of neuropsychiatric diseases demands multi-target drugs that can intervene with various sub-pathologies…”
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Evolution-Inspired Computational Design of Symmetric Proteins by Voet, Arnout R D, Simoncini, David, Tame, Jeremy R H, Zhang, Kam Y J

“…Monomeric proteins with a number of identical repeats creating symmetrical structures are potentially very valuable building blocks with a variety of…”
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A Glutamine Switch Mechanism for Nucleotide Selectivity by Phosphodiesterases by Zhang, Kam Y.J, Card, Graeme L, Suzuki, Yoshihisa, Artis, D.Richard, Fong, Daniel, Gillette, Sam, Hsieh, Davin, Neiman, Joshua, West, Brian L, Zhang, Chao, Milburn, Michael V, Kim, Sung-Hou, Schlessinger, Joseph, Bollag, Gideon

“…Phosphodiesterases (PDEs) comprise a family of enzymes that modulate the immune response, inflammation, and memory, among many other functions. There are three…”
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Scaffold-based discovery of indeglitazar, a PPAR pan-active anti-diabetic agent by Artis, Dean R, Lin, Jack J, Zhang, Chao, Wang, Weiru, Mehra, Upasana, Perreault, Mylene, Erbe, David, Krupka, Heike I, England, Bruce P, Arnold, James, Plotnikov, Alexander N, Marimuthu, Adhirai, Nguyen, Hoa, Will, Sarah, Signaevsky, Maxime, Kral, John, Cantwell, John, Settachatgull, Calvin, Yan, Douglas S, Fong, Daniel, Oh, Angela, Shi, Shenghua, Womack, Patrick, Powell, Benjamin, Habets, Gaston, West, Brian L, Zhang, Kam Y.J, Milburn, Michael V, Vlasuk, George P, Hirth, K. Peter, Nolop, Keith, Bollag, Gideon, Ibrahim, Prabha N, Tobin, James F

“…In a search for more effective anti-diabetic treatment, we used a process coupling low-affinity biochemical screening with high-throughput co-crystallography…”
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Identification of quinazolinyloxy biaryl urea as a new class of SUMO activating enzyme 1 inhibitors by Kumar, Ashutosh, Ito, Akihiro, Hirohama, Mikako, Yoshida, Minoru, Zhang, Kam Y.J.

“…SUMO activating enzyme 1 (SUMO E1) is the first enzyme in sumoylation pathway and an important cancer drug target. However, only a few inhibitors were reported…”
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Novel peptide inhibitors targeting CD40 and CD40L interaction: A potential for atherosclerosis therapy by Solanki, Kundan, Kumar, Ashutosh, Khan, Mohd Shahnawaz, Karthikeyan, Subramani, Atre, Rajat, Zhang, Kam Y J, Bezsonov, Evgeny, Obukhov, Alexander G, Baig, Mirza S

“…Atherosclerosis is a chronic inflammatory disease characterized by plaque build-up in the arteries, leading to the obstruction of blood flow. Macrophages are…”
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