Search Results - "Zhai, Yixiao"

Identifying Antioxidant Proteins by Using Amino Acid Composition and Protein-Protein Interactions by Zhai, Yixiao, Chen, Yu, Teng, Zhixia, Zhao, Yuming

“…Excessive oxidative stress responses can threaten our health, and thus it is essential to produce antioxidant proteins to regulate the body’s oxidative…”
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TPMA: A two pointers meta-alignment tool to ensemble different multiple nucleic acid sequence alignments by Zhai, Yixiao, Chao, Jiannan, Wang, Yizheng, Zhang, Pinglu, Tang, Furong, Zou, Quan

“…Accurate multiple sequence alignment (MSA) is imperative for the comprehensive analysis of biological sequences. However, a notable challenge arises as no…”
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Identify DNA-Binding Proteins Through the Extreme Gradient Boosting Algorithm by Zhao, Ziye, Yang, Wen, Zhai, Yixiao, Liang, Yingjian, Zhao, Yuming

“…The exploration of DNA-binding proteins (DBPs) is an important aspect of studying biological life activities. Research on life activities requires the support…”
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Effects of DNA Methylation on TFs in Human Embryonic Stem Cells by Luo, Ximei, Zhang, Tianjiao, Zhai, Yixiao, Wang, Fang, Zhang, Shumei, Wang, Guohua

“…DNA methylation is an important epigenetic mechanism for gene regulation. The conventional view of DNA methylation is that DNA methylation could disrupt…”
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VTP-Identifier: Vesicular Transport Proteins Identification Based on PSSM Profiles and XGBoost by Gong, Yue, Dong, Benzhi, Zhang, Zixiao, Zhai, Yixiao, Gao, Bo, Zhang, Tianjiao, Zhang, Jingyu

“…Vesicular transport proteins are related to many human diseases, and they threaten human health when they undergo pathological changes. Protein function…”
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AOPM: Application of Antioxidant Protein Classification Model in Predicting the Composition of Antioxidant Drugs by Zhai, Yixiao, Zhang, Jingyu, Zhang, Tianjiao, Gong, Yue, Zhang, Zixiao, Zhang, Dandan, Zhao, Yuming

“…Antioxidant proteins can not only balance the oxidative stress in the body, but are also an important component of antioxidant drugs. Accurate identification…”
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HAlign 3: Fast Multiple Alignment of Ultra-Large Numbers of Similar DNA/RNA Sequences by Tang, Furong, Chao, Jiannan, Wei, Yanming, Yang, Fenglong, Zhai, Yixiao, Xu, Lei, Zou, Quan

“…Abstract HAlign is a cross-platform program that performs multiple sequence alignments based on the center star strategy. Here we present two major updates of…”
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FMAlign2: a novel fast multiple nucleotide sequence alignment method for ultralong datasets by Zhang, Pinglu, Liu, Huan, Wei, Yanming, Zhai, Yixiao, Tian, Qinzhong, Zou, Quan

“…In bioinformatics, multiple sequence alignment (MSA) is a crucial task. However, conventional methods often struggle with aligning ultralong sequences. To…”
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Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data by Tian, Qinzhong, Zhang, Pinglu, Zhai, Yixiao, Wang, Yansu, Zou, Quan

“…The advent of high-throughput sequencing technologies has not only revolutionized the field of bioinformatics but has also heightened the demand for efficient…”
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SBSM-Pro: support bio-sequence machine for proteins by Wang, Yizheng, Zhai, Yixiao, Ding, Yijie, Zou, Quan

“…Proteins play a pivotal role in biological systems. The use of machine learning algorithms for protein classification can assist and even guide biological…”
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Efficient and Privacy-Preserving Outsourcing of Gradient Boosting Decision Tree Inference by Yuan, Shuai, Li, Hongwei, Qian, Xinyuan, Hao, Meng, Zhai, Yixiao, Xu, Guowen

“…Recently, outsourcing machine learning inference services to the cloud has become increasingly popular. The inference process, however, remains an open…”
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PlantCADB: A Comprehensive Plant Chromatin Accessibility Database by Ding, Ke, Sun, Shanwen, Luo, Yang, Long, Chaoyue, Zhai, Jingwen, Zhai, Yixiao, Wang, Guohua

“…Chromatin accessibility landscapes are essential for detecting regulatory elements, illustrating the corresponding regulatory networks, and, ultimately,…”
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Toward Efficient and End-to-End Privacy-Preserving Distributed Gradient Boosting Decision Trees by Yuan, Shuai, Li, Hongwei, Qian, Xinyuan, Hao, Meng, Zhai, Yixiao, Cui, Xiaolong

“…Gradient Boosting Decision Trees (GBDTs) are popular machine learning models due to its simplicity, effectiveness, and interpretability. Recently, to alleviate…”
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SBSM-Pro: Support Bio-sequence Machine for Proteins by Wang, Yizheng, Zhai, Yixiao, Ding, Yijie, Zou, Quan

“…SCIENCE CHINA Information Sciences , Volume 67, Issue 11: 212106 (2024) Proteins play a pivotal role in biological systems. The use of machine learning…”
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