Search Results - "Zerega, Nyree J. C"

HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment by Johnson, Matthew G, Gardner, Elliot M, Liu, Yang, Medina, Rafael, Goffinet, Bernard, Shaw, A. Jonathan, Zerega, Nyree J. C, Wickett, Norman J

“…Premise of the study: Using sequence data generated via target enrichment for phylogenetics requires reassembly of high-throughput sequence reads into loci,…”
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Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop—Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to Taiwan by Chuang, Chia-Rong, Hsieh, Chia-Lun, Chang, Chi-Shan, Wang, Chiu-Mei, Tandang, Danilo N, Gardner, Elliot M, Audi, Lauren, Zerega, Nyree J. C, Chung, Kuo-Fang

“…‘Breadfruit’ is a common tree species in Taiwan. In the indigenous Austronesian Amis culture of eastern Taiwan, ‘breadfruit’ is known as Pacilo , and its…”
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Complex origins of breadfruit (Artocarpus altilis, Moraceae): implications for human migrations in Oceania by Zerega, Nyree J. C, Ragone, Diane, Motley, Timothy J

“…Breadfruit (Artocarpus altilis, Moraceae), a traditional starch crop in Oceania, has enjoyed legendary status ever since its role in the infamous mutiny aboard…”
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Echoes of ancient introgression punctuate stable genomic lineages in the evolution of figs by Gardner, Elliot M, Bruun-Lund, Sam, Niissalo, Matti, Chantarasuwan, Bhanumas, Clement, Wendy L, Geri, Connie, Harrison, Rhett D, Hipp, Andrew L, Holvoet, Maxime, Khew, Gillian, Kjellberg, Finn, Liao, Shuai, Pederneiras, Leandro Cardoso, Peng, Yan-Qiong, Pereira, Joan T, Phillipps, Quentin, Ahmad Puad, Aida Shafreena, Rasplus, Jean-Yves, Sang, Julia, Schou, Sverre Juul, Velautham, Elango, Weiblen, George D, Zerega, Nyree J C, Zhang, Qian, Zhang, Zhen, Baraloto, Christopher, Rønsted, Nina

“…Studies investigating the evolution of flowering plants have long focused on isolating mechanisms such as pollinator specificity. Some recent studies have…”
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Development of Microsatellite Loci in Artocarpus altilis (Moraceae) and Cross-Amplification in Congeneric Species by Witherup, Colby, Ragone, Diane, Wiesner-Hanks, Tyr, Irish, Brian, Scheffler, Brian, Simpson, Sheron, Zee, Francis, Zuberi, M. Iqbal, Zerega, Nyree J. C

“…Premise of the study: Microsatellite loci were isolated and characterized from enriched genomic libraries of Artocarpus altilis (breadfruit) and tested in four…”
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Low-Coverage, Whole-Genome Sequencing of Artocarpus camansi (Moraceae) for Phylogenetic Marker Development and Gene Discovery by Gardner, Elliot M, Johnson, Matthew G, Ragone, Diane, Wickett, Norman J, Zerega, Nyree J. C

“…Premise of the study: We used moderately low-coverage (17×) whole-genome sequencing of Artocarpus camansi (Moraceae) to develop genomic resources for…”
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Phylogeny and Biogeography of Morus (Moraceae) by Yang, Chen-Xuan, Liu, Shui-Yin, Zerega, Nyree J. C., Stull, Gregory W., Gardner, Elliot M., Tian, Qin, Gu, Wei, Lu, Qing, Folk, Ryan A., Kates, Heather R., Guralnick, Robert P., Soltis, Douglas E., Soltis, Pamela S., Wang, Yue-Hua, Yi, Ting-Shuang

“…The mulberry genus, Morus L. (Moraceae), has long been taxonomically difficult, and its species circumscription has only been defined recently. This genus…”
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Genetic diversity and structure of the critically endangered Artocarpus annulatus, a crop wild relative of jackfruit ( A. heterophyllus ) by Dickinson, Leta, Noble, Hilary, Gardner, Elliot, Puad, Aida Shafreena Ahmad, Zakaria, Wan Nuur Fatiha Wan, Zerega, Nyree J.C

“…Limestone karsts of Southeast Asia can harbor high levels of endemism, but are highly fragmented, increasingly threatened, and their biodiversity is often…”
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Phylogeny and Recircumscription of Artocarpeae (Moraceae) with a Focus on Artocarpus by Zerega, Nyree J. C, Supardi, M. N. Nur, Motley, Timothy J

“…Moraceae is a large (∼1,050 species) primarily tropical family with several economically and ecologically important species. While its monophyly has been well…”
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Using amplified fragment length polymorphisms (AFLP) to identify black cohosh (Actaea Racemosa) by Zerega, N.J.C, Mori, S, Lindqvist, C, Zheng, Q, Motley, T.J

“…The rhizome of Actaea racemosa L., commonly called black cohosh, is a popular botanical dietary supplement used to treat female health concerns. The rhizomes…”
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Chloroplast Microsatellite Markers for Artocarpus (Moraceae) Developed from Transcriptome Sequences by Gardner, Elliot M, Laricchia, Kristen M, Murphy, Matthew, Ragone, Diane, Scheffler, Brian E, Simpson, Sheron, Williams, Evelyn W, Zerega, Nyree J. C

“…Premise of the study: Chloroplast microsatellite loci were characterized from transcriptomes of Artocarpus altilis (breadfruit) and A. camansi (breadnut). They…”
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Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus by Kates, Heather Rose, Johnson, Matthew G., Gardner, Elliot M., Zerega, Nyree J. C., Wickett, Norman J.

“…Premise of the Study Untapped information about allele diversity within populations and individuals (i.e., heterozygosity) could improve phylogenetic…”
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Out of Borneo: biogeography, phylogeny and divergence date estimates of Artocarpus (Moraceae) by Williams, Evelyn W., Gardner, Elliot M., Harris, Robert, Chaveerach, Arunrat, Pereira, Joan T., Zerega, Nyree J. C.

“…The breadfruit genus ( Artocarpus , Moraceae) includes valuable underutilized fruit tree crops with a centre of diversity in Southeast Asia. It belongs to the…”
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Paralogs and off-target sequences improve phylogenetic resolution in a densely-sampled study of the breadfruit genus (Artocarpus, Moraceae) by Gardner, Elliot M, Johnson, Matthew G, Pereira, Joan T, Puad, Aida Shafreena Ahmad, Arifiani, Deby, Wickett, Norman J, Zerega, Nyree J C

“…We present a 517-gene phylogenetic framework for the breadfruit genus Artocarpus (ca. 70 spp., Moraceae), making use of silica-dried leaves from recent…”
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Linking breadfruit cultivar names across the globe connects histories after 230 years of separation by Audi, Lauren, Shallow, Gordon, Robertson, Erasto, Bobo, Dean, Ragone, Diane, Gardner, Elliot M., Jhurree-Dussoruth, Babita, Wajer, Jacek, Zerega, Nyree J.C.

“…Every crop has a story. The story of breadfruit (Artocarpus altilis), an increasingly valued staple crop in tropical agroforestry systems, is filled with…”
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Engagement with indigenous people preserves local knowledge and biodiversity alike by Gardner, Elliot M., Ahmad Puad, Aida Shafreena, Pereira, Joan T., Tagi, Jugah anak, Nyegang, Salang anak, Miun, Postar, Jumian, Jeisin, Pokorny, Lisa, Zerega, Nyree J.C.

“…Indigenous peoples are important stewards of biodiversity, often living near and possessing intimate knowledge of ecosystems. As a result, species new to…”
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Phylogeny and biogeography of Maclura (Moraceae) and the origin of an anachronistic fruit by Gardner, Elliot M., Sarraf, Paya, Williams, Evelyn W., Zerega, Nyree J.C.

“…[Display omitted] •Maclura likely originated in the New World in the Paleocene.•Models support a rapid increase in both syncarp size in the Osage orange…”
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Amis Pacilo and Yami Cipoho are not the same as the Pacific breadfruit starch crop-Target enrichment phylogenomics of a long-misidentified Artocarpus species sheds light on the northward Austronesian migration from the Philippines to Taiwan by Chia-Rong Chuang, Chia-Lun Hsieh, Chi-Shan Chang, Chiu-Mei Wang, Danilo N Tandang, Elliot M Gardner, Lauren Audi, Nyree J C Zerega, Kuo-Fang Chung

“…'Breadfruit' is a common tree species in Taiwan. In the indigenous Austronesian Amis culture of eastern Taiwan, 'breadfruit' is known as Pacilo, and its fruits…”
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Genetic Diversity of Bangladeshi Jackfruit (Artocarpus heterophyllus) over Time and Across Seedling Sources by Witherup, Colby, Zuberi, M. Iqbal, Hossain, Salma, Zerega, Nyree J. C.

“…Crop genetic diversity is important, but may be lost due to intentional or non-intentional selection processes. Jackfruit ( Artocarpus heterophyllus ) is the…”
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A transcriptome screen for positive selection in domesticated breadfruit and its wild relatives (Artocarpus spp.) by Laricchia, Kristen M., Johnson, Matthew G., Ragone, Diane, Williams, Evelyn W., Zerega, Nyree J. C., Wickett, Norman J.

“…Premise of the Study Underutilized crops, such as breadfruit (Artocarpus altilis, Moraceae) have the potential to improve global food security. Humans have…”
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