Search Results - "Zavolan, M"

Deciphering the role of RNA-binding proteins in the post-transcriptional control of gene expression by Kishore, Shivendra, Luber, Sandra, Zavolan, Mihaela

“…Eukaryotic cells express a large variety of ribonucleic acid-(RNA)-binding proteins (RBPs) with diverse affinity and specificity towards target RNAs that play…”
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MirZ: an integrated microRNA expression atlas and target prediction resource by Hausser, Jean, Berninger, Philipp, Rodak, Christoph, Jantscher, Yvonne, Wirth, Stefan, Zavolan, Mihaela

“…MicroRNAs (miRNAs) are short RNAs that act as guides for the degradation and translational repression of protein-coding mRNAs. A large body of work showed that…”
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Analysis of the Genetic Variability of Virulence-Related Loci in Epidemic Clones of Methicillin-Resistant Staphylococcus aureus by GOMES, A. R, VINGA, S, ZAVOLAN, M, DE LENCASTRE, H

“…Classifications Services AAC Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Computational Analysis of Full-length cDNAs Reveals Frequent Coupling Between Transcriptional and Splicing Programs by Chern, Tzu-Ming, Paul, Nicodeme, van Nimwegen, Erik, Zavolan, Mihaela

“…High-throughput sequencing studies revealed that the majority of human and mouse multi-exon genes have multiple splice forms. High-density oligonucleotide…”
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P1303 clfB typing in Staphylococcus aureus : online database for dis-play, clustering analysis and storage of clfB DNA sequences by Gomes, A.R, Carriço, J, Vinga, S, Oliveira, A.L, Zavolan, M, de Lencastre, H

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Analysis of CDS-located miRNA target sites suggests that they can effectively inhibit translation by Hausser, Jean, Syed, Afzal Pasha, Bilen, Biter, Zavolan, Mihaela

“…Most of what is presently known about how miRNAs regulate gene expression comes from studies that characterized the regulatory effect of miRNA binding sites…”
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CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins by Khorshid, Mohsen, Rodak, Christoph, Zavolan, Mihaela

“…The stability, localization and translation rate of mRNAs are regulated by a multitude of RNA-binding proteins (RBPs) that find their targets directly or with…”
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Virus-encoded microRNAs: novel regulators of gene expression by Nair, Venugopal, Zavolan, Mihaela

“…MicroRNAs (miRNAs) are a class of small RNAs that have recently been recognized as major regulators of gene expression. They influence diverse cellular…”
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Cell-Type-Specific Signatures of MicroRNAs on Target mRNA Expression by Sood, Pranidhi, Krek, Azra, Zavolan, Mihaela, Macino, Giuseppe, Rajewsky, Nikolaus

“…Although it is known that the human genome contains hundreds of microRNA (miRNA) genes and that each miRNA can regulate a large number of mRNA targets, the…”
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Aberrant interaction of FUS with the U1 snRNA provides a molecular mechanism of FUS induced amyotrophic lateral sclerosis by Jutzi, Daniel, Campagne, Sébastien, Schmidt, Ralf, Reber, Stefan, Mechtersheimer, Jonas, Gypas, Foivos, Schweingruber, Christoph, Colombo, Martino, von Schroetter, Christine, Loughlin, Fionna E., Devoy, Anny, Hedlund, Eva, Zavolan, Mihaela, Allain, Frédéric H.-T., Ruepp, Marc-David

“…Mutations in the RNA-binding protein Fused in Sarcoma (FUS) cause early-onset amyotrophic lateral sclerosis (ALS). However, a detailed understanding of central…”
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A Mammalian microRNA Expression Atlas Based on Small RNA Library Sequencing by Landgraf, Pablo, Rusu, Mirabela, Sheridan, Robert, Sewer, Alain, Iovino, Nicola, Aravin, Alexei, Pfeffer, Sébastien, Rice, Amanda, Kamphorst, Alice O., Landthaler, Markus, Lin, Carolina, Socci, Nicholas D., Hermida, Leandro, Fulci, Valerio, Chiaretti, Sabina, Foà, Robin, Schliwka, Julia, Fuchs, Uta, Novosel, Astrid, Müller, Roman-Ulrich, Schermer, Bernhard, Bissels, Ute, Inman, Jason, Phan, Quang, Chien, Minchen, Weir, David B., Choksi, Ruchi, De Vita, Gabriella, Frezzetti, Daniela, Trompeter, Hans-Ingo, Hornung, Veit, Teng, Grace, Hartmann, Gunther, Palkovits, Miklos, Di Lauro, Roberto, Wernet, Peter, Macino, Giuseppe, Rogler, Charles E., Nagle, James W., Ju, Jingyue, Papavasiliou, F. Nina, Benzing, Thomas, Lichter, Peter, Tam, Wayne, Brownstein, Michael J., Bosio, Andreas, Borkhardt, Arndt, Russo, James J., Sander, Chris, Zavolan, Mihaela, Tuschl, Thomas

“…MicroRNAs (miRNAs) are small noncoding regulatory RNAs that reduce stability and/or translation of fully or partially sequence-complementary target mRNAs. In…”
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A novel class of small RNAs bind to MILI protein in mouse testes by Pfeffer, Sébastien, Nakano, Toru, Tuschl, Thomas, Iovino, Nicola, Chien, Minchen, Landgraf, Pablo, Lagos-Quintana, Mariana, Zavolan, Mihaela, Ju, Jingyue, Gaidatzis, Dimos, Morris, Patricia, Sheridan, Robert, Brownstein, Michael J, Sander, Chris, Aravin, Alexei, Russo, James J, Kuramochi-Miyagawa, Satomi

“…Small RNAs bound to Argonaute proteins recognize partially or fully complementary nucleic acid targets in diverse gene-silencing processes. A subgroup of the…”
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The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line by Suzuki, Harukazu, Forrest, Alistair R R, van Nimwegen, Erik, Daub, Carsten O, Balwierz, Piotr J, Irvine, Katharine M, Lassmann, Timo, Ravasi, Timothy, Hasegawa, Yuki, de Hoon, Michiel J L, Katayama, Shintaro, Schroder, Kate, Carninci, Piero, Tomaru, Yasuhiro, Kanamori-Katayama, Mutsumi, Kubosaki, Atsutaka, Akalin, Altuna, Ando, Yoshinari, Arner, Erik, Asada, Maki, Asahara, Hiroshi, Bailey, Timothy, Bajic, Vladimir B, Bauer, Denis, Beckhouse, Anthony G, Bertin, Nicolas, Björkegren, Johan, Brombacher, Frank, Bulger, Erika, Chalk, Alistair M, Chiba, Joe, Cloonan, Nicole, Dawe, Adam, Dostie, Josee, Engström, Pär G, Essack, Magbubah, Faulkner, Geoffrey J, Fink, J Lynn, Fredman, David, Fujimori, Ko, Furuno, Masaaki, Gojobori, Takashi, Gough, Julian, Grimmond, Sean M, Gustafsson, Mika, Hashimoto, Megumi, Hashimoto, Takehiro, Hatakeyama, Mariko, Heinzel, Susanne, Hide, Winston, Hofmann, Oliver, Hörnquist, Michael, Huminiecki, Lukasz, Ikeo, Kazuho, Imamoto, Naoko, Inoue, Satoshi, Inoue, Yusuke, Ishihara, Ryoko, Iwayanagi, Takao, Jacobsen, Anders, Kaur, Mandeep, Kawaji, Hideya, Kerr, Markus C, Kimura, Ryuichiro, Kimura, Syuhei, Kimura, Yasumasa, Kitano, Hiroaki, Koga, Hisashi, Kojima, Toshio, Kondo, Shinji, Konno, Takeshi, Krogh, Anders, Kruger, Adele, Kumar, Ajit, Lenhard, Boris, Lennartsson, Andreas, Lindow, Morten, Lizio, Marina, Macpherson, Cameron, Maeda, Norihiro, Maher, Christopher A, Maqungo, Monique, Mar, Jessica, Matigian, Nicholas A, Matsuda, Hideo, Mattick, John S, Meier, Stuart, Miyamoto, Sei, Miyamoto-Sato, Etsuko, Nakabayashi, Kazuhiko, Nakachi, Yutaka, Nakano, Mika, Nygaard, Sanne, Okayama, Toshitsugu, Okazaki, Yasushi, Okuda-Yabukami, Haruka, Orlando, Valerio, Otomo, Jun, Pachkov, Mikhail, Petrovsky, Nikolai

“…The FANTOM4 study identified transcriptional start sites active during proliferation arrest and differentiation of the human monocytic cell line THP-1…”
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Identification of Virus-Encoded MicroRNAs by Pfeffer, Sébastien, Zavolan, Mihaela, Grässer, Friedrich A., Chien, Minchen, Russo, James J., Ju, Jingyue, John, Bino, Enright, Anton J., Marks, Debora, Sander, Chris, Tuschl, Thomas

“…RNA silencing processes are guided by small RNAs that are derived from double-stranded RNA. To probe for function of RNA silencing during infection of human…”
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The Small RNA Profile during Drosophila melanogaster Development by Aravin, Alexei A., Lagos-Quintana, Mariana, Yalcin, Abdullah, Zavolan, Mihaela, Marks, Debora, Snyder, Ben, Gaasterland, Terry, Meyer, Jutta, Tuschl, Thomas

“…Small RNAs ranging in size between 20 and 30 nucleotides are involved in different types of regulation of gene expression including mRNA degradation,…”
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Elevated Expression of the miR-17–92 Polycistron and miR-21 in Hepadnavirus-Associated Hepatocellular Carcinoma Contributes to the Malignant Phenotype by Connolly, Erin, Melegari, Margherita, Landgraf, Pablo, Tchaikovskaya, Tatyana, Tennant, Bud C, Slagle, Betty L, Rogler, Leslie E, Zavolan, Mihaela, Tuschl, Thomas, Rogler, Charles E

“…Alterations in microRNA (miRNA) expression in both human and animal models have been linked to many forms of cancer. Such miRNAs, which act directly as…”
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Identification of microRNAs of the herpesvirus family by Zavolan, Mihaela, Tuschl, Thomas, Pfeffer, Sébastien, Sewer, Alain, Lagos-Quintana, Mariana, Sheridan, Robert, Sander, Chris, Grässer, Friedrich A, van Dyk, Linda F, Ho, C Kiong, Shuman, Stewart, Chien, Minchen, Russo, James J, Ju, Jingyue, Randall, Glenn, Lindenbach, Brett D, Rice, Charles M, Simon, Viviana, Ho, David D

“…Epstein-Barr virus (EBV or HHV4), a member of the human herpesvirus (HHV) family, has recently been shown to encode microRNAs (miRNAs). In contrast to most…”
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Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes by Yang, Edward, van Nimwegen, Erik, Zavolan, Mihaela, Rajewsky, Nikolaus, Schroeder, Mark, Magnasco, Marcelo, Darnell, Jr, James E

“…Although mRNA decay rates are a key determinant of the steady-state concentration for any given mRNA species, relatively little is known, on a population…”
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Modeling the binding specificity of the RNA-binding protein GLD-1 suggests a function of coding region-located sites in translational repression by Brümmer, Anneke, Kishore, Shivendra, Subasic, Deni, Hengartner, Michael, Zavolan, Mihaela

“…To understand the function of the hundreds of RNA-binding proteins (RBPs) that are encoded in animal genomes it is important to identify their target RNAs…”
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Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs by Okazaki, Y, Furuno, M, Kasukawa, T, Adachi, J, Bono, H, Kondo, S, Nikaido, I, Osato, N, Saito, R, Suzuki, H, Yamanaka, I, Kiyosawa, H, Yagi, K, Tomaru, Y, Hasegawa, Y, Nogami, A, Schönbach, C, Gojobori, T, Baldarelli, R, Hill, D P, Bult, C, Hume, D A, Quackenbush, J, Schriml, L M, Kanapin, A, Matsuda, H, Batalov, S, Beisel, K W, Blake, J A, Bradt, D, Brusic, V, Chothia, C, Corbani, L E, Cousins, S, Dalla, E, Dragani, T A, Fletcher, C F, Forrest, A, Frazer, K S, Gaasterland, T, Gariboldi, M, Gissi, C, Godzik, A, Gough, J, Grimmond, S, Gustincich, S, Hirokawa, N, Jackson, I J, Jarvis, E D, Kanai, A, Kawaji, H, Kawasawa, Y, Kedzierski, R M, King, B L, Konagaya, A, Kurochkin, I V, Lee, Y, Lenhard, B, Lyons, P A, Maglott, D R, Maltais, L, Marchionni, L, McKenzie, L, Miki, H, Nagashima, T, Numata, K, Okido, T, Pavan, W J, Pertea, G, Pesole, G, Petrovsky, N, Pillai, R, Pontius, J U, Qi, D, Ramachandran, S, Ravasi, T, Reed, J C, Reed, D J, Reid, J, Ring, B Z, Ringwald, M, Sandelin, A, Schneider, C, Semple, C A M, Setou, M, Shimada, K, Sultana, R, Takenaka, Y, Taylor, M S, Teasdale, R D, Tomita, M, Verardo, R, Wagner, L, Wahlestedt, C, Wang, Y, Watanabe, Y, Wells, C, Wilming, L G, Wynshaw-Boris, A, Yanagisawa, M

“…Only a small proportion of the mouse genome is transcribed into mature messenger RNA transcripts. There is an international collaborative effort to identify…”
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