Search Results - "Zamani, Neda"

Supervised Saliency Map Driven Segmentation of Lesions in Dermoscopic Images by Jahanifar, Mostafa, Zamani Tajeddin, Neda, Mohammadzadeh Asl, Babak, Gooya, Ali

“…Lesion segmentation is the first step in most automatic melanoma recognition systems. Deficiencies and difficulties in dermoscopic images such as color…”
Get full text

NuClick: A deep learning framework for interactive segmentation of microscopic images by Alemi Koohbanani, Navid, Jahanifar, Mostafa, Zamani Tajadin, Neda, Rajpoot, Nasir

“…•We propose the first interactive deep learning frame work to facilitate and speed up collecting reproducible and reliable annotation in the field of…”
Get full text

A Single nucleotide polymorphism in the ALDH2 gene modifies the risk of esophageal squamous cell carcinoma in BRCA2 p.K3326 carriers by Zamani, Neda, Szymiczek, Agata, Shakeri, Ramin, Poustchi, Hossein, Pourshams, Akram, Narod, Steven, Malekzadeh, Reza, Akbari, Mohammad R

“…Esophageal squamous cell carcinoma (ESCC) has a very high incidence rate in northeastern Iran. Our team previously reported the BReast CAncer gene 2 ( BRCA2 )…”
Get full text

Reading and editing the Pleurodeles waltl genome reveals novel features of tetrapod regeneration by Elewa, Ahmed, Wang, Heng, Talavera-López, Carlos, Joven, Alberto, Brito, Gonçalo, Kumar, Anoop, Hameed, L. Shahul, Penrad-Mobayed, May, Yao, Zeyu, Zamani, Neda, Abbas, Yamen, Abdullayev, Ilgar, Sandberg, Rickard, Grabherr, Manfred, Andersson, Björn, Simon, András

“…Salamanders exhibit an extraordinary ability among vertebrates to regenerate complex body parts. However, scarce genomic resources have limited our…”
Get full text

Fluoxetine-induced Hypotension: A Case Report by Hosseini, Seyed Hamzeh, Zamani, Neda, Ahmadi, Amirhossein

“…Fluoxetine is a Selective Serotonin Reuptake Inhibitor (SSRI) that exerts its anti-depressive effect by blocking the presynaptic reuptake of the…”
Get full text

PiiL: visualization of DNA methylation and gene expression data in gene pathways by Moghadam, Behrooz Torabi, Zamani, Neda, Komorowski, Jan, Grabherr, Manfred

“…DNA methylation is a major mechanism involved in the epigenetic state of a cell. It has been observed that the methylation status of certain CpG sites close to…”
Get full text

ACES: a machine learning toolbox for clustering analysis and visualization by Gao, Jiangning, Sundström, Görel, Moghadam, Behrooz Torabi, Zamani, Neda, Grabherr, Manfred G

“…Studies that aim at explaining phenotypes or disease susceptibility by genetic or epigenetic variants often rely on clustering methods to stratify individuals…”
Get full text

Diplopia Caused by Aripiprazole in a Depressed Patient With Healthy Eyesrt by Hosseini, Hamzeh, Zamani, Neda, Ahmadi, Amirhossein

“…Background:  Diplopia, or double vision, is a common ophthalmologic complaint with many underlying causes, ocular and neurological. Aripiprazole has been…”
Get full text

Unsupervised genome-wide recognition of local relationship patterns by Zamani, Neda, Russell, Pamela, Lantz, Henrik, Hoeppner, Marc P, Meadows, Jennifer Rs, Vijay, Nagarjun, Mauceli, Evan, di Palma, Federica, Lindblad-Toh, Kerstin, Jern, Patric, Grabherr, Manfred G

“…Phenomena such as incomplete lineage sorting, horizontal gene transfer, gene duplication and subsequent sub- and neo-functionalisation can result in distinct…”
Get full text

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies) by Delhomme, Nicolas, Sundström, Görel, Zamani, Neda, Lantz, Henrik, Lin, Yao-Cheng, Hvidsten, Torgeir R, Höppner, Marc P, Jern, Patric, Van de Peer, Yves, Lundeberg, Joakim, Grabherr, Manfred G, Street, Nathaniel R

“…After performing de novo transcript assembly of >1 billion RNA-Sequencing reads obtained from 22 samples of different Norway spruce (Picea abies) tissues that…”
Get full text

Genetic testing women with newly diagnosed breast cancer: What criteria are the most predictive of a positive test? by Metcalfe, Kelly A., Narod, Steven A., Eisen, Andrea, Poll, Aletta, Zamani, Neda, McCready, David, Cil, Tulin D., Wright, Frances C., Lerner‐Ellis, Jordan, McCuaig, Jeanna, Graham, Tracy, Sun, Ping, Akbari, Mohammad R.

“…Background Knowledge of pathogenic variants in cancer‐predisposing genes is important when making breast cancer treatment decisions, but genetic testing is not…”
Get full text

Melanoma recognition in dermoscopy images using lesion's peripheral region information by Tajeddin, Neda Zamani, Asl, Babak Mohammadzadeh

“…•A high precision system for melanoma recognition based on dermoscopic images.•Limiting the complex texture features to the lesion area only.•Introducing a set…”
Get full text

A new probiotic Lactobacillus plantarum strain isolated from traditional dairy together with nanochitosan particles shows the synergistic effect on aflatoxin B1 detoxification by Zamani, Neda, Fazeli, Mohammad Reza, Sepahi, Abbas Akhavan, Shariatmadari, Farid

“…The present study aimed to evaluate the effects of new Lactobacillus plantarum strain isolated from dairy products as well as chitosan nanoparticles on…”
Get full text

Evolution of Darwin’s finches and their beaks revealed by genome sequencing by Lamichhaney, Sangeet, Berglund, Jonas, Almén, Markus Sällman, Maqbool, Khurram, Grabherr, Manfred, Martinez-Barrio, Alvaro, Promerová, Marta, Rubin, Carl-Johan, Wang, Chao, Zamani, Neda, Grant, B. Rosemary, Grant, Peter R., Webster, Matthew T., Andersson, Leif

“…Darwin’s finches, inhabiting the Galápagos archipelago and Cocos Island, constitute an iconic model for studies of speciation and adaptive evolution. Here we…”
Get full text

A Multi-Organ Nucleus Segmentation Challenge by Kumar, Neeraj, Verma, Ruchika, Anand, Deepak, Zhou, Yanning, Onder, Omer Fahri, Tsougenis, Efstratios, Chen, Hao, Heng, Pheng-Ann, Li, Jiahui, Hu, Zhiqiang, Wang, Yunzhi, Koohbanani, Navid Alemi, Jahanifar, Mostafa, Tajeddin, Neda Zamani, Gooya, Ali, Rajpoot, Nasir, Ren, Xuhua, Zhou, Sihang, Wang, Qian, Shen, Dinggang, Yang, Cheng-Kun, Weng, Chi-Hung, Yu, Wei-Hsiang, Yeh, Chao-Yuan, Yang, Shuang, Xu, Shuoyu, Yeung, Pak Hei, Sun, Peng, Mahbod, Amirreza, Schaefer, Gerald, Ellinger, Isabella, Ecker, Rupert, Smedby, Orjan, Wang, Chunliang, Chidester, Benjamin, Ton, That-Vinh, Tran, Minh-Triet, Ma, Jian, Do, Minh N., Graham, Simon, Vu, Quoc Dang, Kwak, Jin Tae, Gunda, Akshaykumar, Chunduri, Raviteja, Hu, Corey, Zhou, Xiaoyang, Lotfi, Dariush, Safdari, Reza, Kascenas, Antanas, O'Neil, Alison, Eschweiler, Dennis, Stegmaier, Johannes, Cui, Yanping, Yin, Baocai, Chen, Kailin, Tian, Xinmei, Gruening, Philipp, Barth, Erhardt, Arbel, Elad, Remer, Itay, Ben-Dor, Amir, Sirazitdinova, Ekaterina, Kohl, Matthias, Braunewell, Stefan, Li, Yuexiang, Xie, Xinpeng, Shen, Linlin, Ma, Jun, Baksi, Krishanu Das, Khan, Mohammad Azam, Choo, Jaegul, Colomer, Adrian, Naranjo, Valery, Pei, Linmin, Iftekharuddin, Khan M., Roy, Kaushiki, Bhattacharjee, Debotosh, Pedraza, Anibal, Bueno, Maria Gloria, Devanathan, Sabarinathan, Radhakrishnan, Saravanan, Koduganty, Praveen, Wu, Zihan, Cai, Guanyu, Liu, Xiaojie, Wang, Yuqin, Sethi, Amit

“…Generalized nucleus segmentation techniques can contribute greatly to reducing the time to develop and validate visual biomarkers for new digital pathology…”
Get full text

Supervised Saliency Map Driven Segmentation of the Lesions in Dermoscopic Images by Jahanifar, Mostafa, Tajeddin, Neda Zamani, Asl, Babak Mohammadzadeh, Gooya, Ali

“…Lesion segmentation is the first step in most automatic melanoma recognition systems. Deficiencies and difficulties in dermoscopic images such as color…”
Get full text

Robust Interactive Semantic Segmentation of Pathology Images with Minimal User Input by Jahanifar, Mostafa, Tajeddin, Neda Zamani, Koohbanani, Navid Alemi, Rajpoot, Nasir

“…From the simple measurement of tissue attributes in pathology workflow to designing an explainable diagnostic/prognostic AI tool, access to accurate semantic…”
Get full text

Impact of germline mutations in cancer-predisposing genes on long-term survival in patients with epithelial ovarian cancer by Kotsopoulos, Joanne, Zamani, Neda, Rosen, Barry, McLaughlin, John R., Risch, Harvey A., Kim, Shana J., Sun, Ping, Akbari, Mohammad Reza, Narod, Steven A.

“…Background Several clinical and tumour factors impact on ovarian cancer survival. It is important to evaluate if germline mutations impact long-term outcomes…”
Get full text

Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen by Lin, Yao-Cheng, Wang, Jing, Delhomme, Nicolas, Schiffthaler, Bastian, Sundström, Görel, Zuccolo, Andrea, Nystedt, Björn, Hvidsten, Torgeir R., de la Torre, Amanda, Cossu, Rosa M., Hoeppner, Marc P., Lantz, Henrik, Scofield, Douglas G., Zamani, Neda, Johansson, Anna, Mannapperuma, Chanaka, Robinson, Kathryn M., Mähler, Niklas, Leitch, Ilia J., Pellicer, Jaume, Park, Eung-Jun, Van Montagu, Marc, Van de Peer, Yves, Grabherr, Manfred, Jansson, Stefan, Ingvarsson, Pär K., Street, Nathaniel R.

“…The Populus genus is one of the major plant model systems, but genomic resources have thus far primarily been available for poplar species, and primarily…”
Get full text

An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts by Hoeppner, Marc P, Lundquist, Andrew, Pirun, Mono, Meadows, Jennifer R S, Zamani, Neda, Johnson, Jeremy, Sundström, Görel, Cook, April, FitzGerald, Michael G, Swofford, Ross, Mauceli, Evan, Moghadam, Behrooz Torabi, Greka, Anna, Alföldi, Jessica, Abouelleil, Amr, Aftuck, Lynne, Bessette, Daniel, Berlin, Aaron, Brown, Adam, Gearin, Gary, Lui, Annie, Macdonald, J Pendexter, Priest, Margaret, Shea, Terrance, Turner-Maier, Jason, Zimmer, Andrew, Lander, Eric S, di Palma, Federica, Lindblad-Toh, Kerstin, Grabherr, Manfred G

“…The domestic dog, Canis familiaris, is a well-established model system for mapping trait and disease loci. While the original draft sequence was of good…”
Get full text