Search Results - "ZELIKOVSKY, Alexander"

Benchmarking machine learning robustness in Covid-19 genome sequence classification by Ali, Sarwan, Sahoo, Bikram, Zelikovsky, Alexander, Chen, Pin-Yu, Patterson, Murray

“…The rapid spread of the COVID-19 pandemic has resulted in an unprecedented amount of sequence data of the SARS-CoV-2 genome—millions of sequences and counting…”
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GaussianCpG: a Gaussian model for detection of CpG island in human genome sequences by Yu, Ning, Guo, Xuan, Zelikovsky, Alexander, Pan, Yi

“…As crucial markers in identifying biological elements and processes in mammalian genomes, CpG islands (CGI) play important roles in DNA methylation, gene…”
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Assessing the Resilience of Machine Learning Classification Algorithms on SARS-CoV-2 Genome Sequences Generated with Long-Read Specific Errors by Sahoo, Bikram, Ali, Sarwan, Chen, Pin-Yu, Patterson, Murray, Zelikovsky, Alexander

“…The emergence of third-generation single-molecule sequencing (TGS) technology has revolutionized the generation of long reads, which are essential for genome…”
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Automated quality control for a molecular surveillance system by Sims, Seth, Longmire, Atkinson G, Campo, David S, Ramachandran, Sumathi, Medrzycki, Magdalena, Ganova-Raeva, Lilia, Lin, Yulin, Sue, Amanda, Thai, Hong, Zelikovsky, Alexander, Khudyakov, Yury

“…Molecular surveillance and outbreak investigation are important for elimination of hepatitis C virus (HCV) infection in the United States. A web-based system,…”
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Influence of symbiont-produced bioactive natural products on holobiont fitness in the marine bryozoan, Bugula neritina via protein kinase C (PKC) by Mathew, Meril, Bean, Kayla I, Temate-Tiagueu, Yvette, Caciula, Adrian, Mandoiu, Ion I, Zelikovsky, Alexander, Lopanik, Nicole B

“…Marine invertebrates are a major source of bioactive natural products, many of which are produced by associated microbes. These compounds protect the…”
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Selecting Forwarding Neighbors in Wireless Ad Hoc Networks by Calinescu, Gruia, Mandoiu, Ion I, Wan, Peng-Jun, Zelikovsky, Alexander Z

“…Broadcasting is a fundamental operation which is frequent in wireless ad hoc networks. A simple broadcasting mechanism, known as flooding, is to let every node…”
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Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications by Cai, Zhipeng, Zelikovsky, Alexander

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Epidemiological data analysis of viral quasispecies in the next-generation sequencing era by Knyazev, Sergey, Hughes, Lauren, Skums, Pavel, Zelikovsky, Alexander

“…Abstract The unprecedented coverage offered by next-generation sequencing (NGS) technology has facilitated the assessment of the population complexity of…”
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Efficient Approximate Kernel Based Spike Sequence Classification by Ali, Sarwan, Sahoo, Bikram, Khan, Muhammad Asad, Zelikovsky, Alexander, Khan, Imdad Ullah, Patterson, Murray

“…Machine learning (ML) models, such as SVM, for tasks like classification and clustering of sequences, require a definition of distance/similarity between pairs…”
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Special issue on Computing and Combinatorics Conference by Cai, Zhipeng, Zelikovsky, Alexander

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Computing and Combinatorics by Cai, Zhipeng, Zelikovsky, Alexander

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Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020) by Cai, Zhipeng, Skums, Pavel, Porozov, Yuri, Zelikovsky, Alexander

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Special Issue: 16th International Symposium on Bioinformatics Research and Applications (ISBRA 2020) by Cai, Zhipeng, Skums, Pavel, Porozov, Yuri, Zelikovsky, Alexander

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Special Issue Preface: 13th International Symposium on BioinformaticsResearch and Applications (ISBRA 2017) by Cai, Zhipeng, Skums, Pavel, Zelikovsky, Alexander

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Special Issue: 10th International Computational Advances in Bio and Medical Sciences (ICCABS 2020) by Jha, Sumit Kumar, MĂndoiu, Ion, Rajasekaran, Sanguthevar, Skums, Pavel, Zelikovsky, Alexander

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Estimating Enzyme Expression and Metabolic Pathway Activity in Borreliella-Infected and Uninfected Mice by Rondel, Filipp Martin, Farooq, Hafsa, Hosseini, Roya, Juyal, Akshay, Knyazev, Sergey, Mangul, Serghei, Rogovskyy, Artem S, Zelikovsky, Alexander

“…Evaluating changes in metabolic pathway activity is essential for studying disease mechanisms and developing new treatments, with significant benefits…”
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Scalable heuristics for design of DNA probe arrays by Kahng, Andrew B, Măndoiu, Ion I, Pevzner, Pavel A, Reda, Sherief, Zelikovsky, Alexander Z

“…Design of DNA arrays for very large-scale immobilized polymer synthesis (VLSIPS) (Fodor et al., 1991) seeks to minimize effects of unintended illumination…”
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A note on the MST heuristic for bounded edge-length Steiner trees with minimum number of Steiner points by Măndoiu, Ion I., Zelikovsky, Alexander Z.

“…We give a tight analysis of the MST heuristic recently introduced by G.-H. Lin and G. Xue for approximating the Steiner tree with minimum number of Steiner…”
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Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications by Mandoiu, Ion I., Skums, Pavel, Zelikovsky, Alexander

“…The papers in this special section were presented at the 12th International Symposium on Bioinformatics Research and Application (ISBRA), which was held at…”
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Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data by Rondel, Filipp Martin, Hosseini, Roya, Sahoo, Bikram, Knyazev, Sergey, Mandric, Igor, Stewart, Frank, Măndoiu, Ion I, Pasaniuc, Bogdan, Porozov, Yuri, Zelikovsky, Alexander

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