Search Results - "ZAKRZEWSKI, Martha"

Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions by Zakrzewski, Martha, Proietti, Carla, Ellis, Jonathan J, Hasan, Shihab, Brion, Marie-Jo, Berger, Bernard, Krause, Lutz

“…Calypso is an easy-to-use online software suite that allows non-expert users to mine, interpret and compare taxonomic information from metagenomic or 16S rDNA…”
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Vitamin D and the gut microbiome: a systematic review of in vivo studies by Waterhouse, Mary, Hope, Bronwyn, Krause, Lutz, Morrison, Mark, Protani, Melinda M., Zakrzewski, Martha, Neale, Rachel E.

“…Purpose Variation in the human microbiome has been linked with a variety of physiological functions, including immune regulation and metabolism and…”
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EDGAR: a software framework for the comparative analysis of prokaryotic genomes by Blom, Jochen, Albaum, Stefan P, Doppmeier, Daniel, Pühler, Alfred, Vorhölter, Frank-Jörg, Zakrzewski, Martha, Goesmann, Alexander

“…The introduction of next generation sequencing approaches has caused a rapid increase in the number of completely sequenced genomes. As one result of this…”
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The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts by D Ainsworth, Tracy, Krause, Lutz, Bridge, Thomas, Torda, Gergely, Raina, Jean-Baptise, Zakrzewski, Martha, Gates, Ruth D, Padilla-Gamiño, Jacqueline L, Spalding, Heather L, Smith, Celia, Woolsey, Erika S, Bourne, David G, Bongaerts, Pim, Hoegh-Guldberg, Ove, Leggat, William

“…Despite being one of the simplest metazoans, corals harbor some of the most highly diverse and abundant microbial communities. Differentiating core, symbiotic…”
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Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes by Ausec, Luka, Zakrzewski, Martha, Goesmann, Alexander, Schlüter, Andreas, Mandic-Mulec, Ines

“…Fungal laccases have been used in various fields ranging from processes in wood and paper industries to environmental applications. Although a few bacterial…”
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Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok by Zakrzewski, Martha, Rašić, Gordana, Darbro, Jonathan, Krause, Lutz, Poo, Yee S., Filipović, Igor, Parry, Rhys, Asgari, Sassan, Devine, Greg, Suhrbier, Andreas

“…Medically important arboviruses such as dengue, Zika, and chikungunya viruses are primarily transmitted by the globally distributed mosquito Aedes aegypti …”
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NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease by Tye, Hazel, Yu, Chien-Hsiung, Simms, Lisa A., de Zoete, Marcel R., Kim, Man Lyang, Zakrzewski, Martha, Penington, Jocelyn S., Harapas, Cassandra R., Souza-Fonseca-Guimaraes, Fernando, Wockner, Leesa F., Preaudet, Adele, Mielke, Lisa A., Wilcox, Stephen A., Ogura, Yasunori, Corr, Sinead C., Kanojia, Komal, Kouremenos, Konstantinos A., De Souza, David P., McConville, Malcolm J., Flavell, Richard A., Gerlic, Motti, Kile, Benjamin T., Papenfuss, Anthony T., Putoczki, Tracy L., Radford-Smith, Graham L., Masters, Seth L.

“…Anti-microbial signaling pathways are normally triggered by innate immune receptors when detecting pathogenic microbes to provide protective immunity. Here we…”
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Profiling of the metabolically active community from a production-scale biogas plant by means of high-throughput metatranscriptome sequencing by Zakrzewski, Martha, Goesmann, Alexander, Jaenicke, Sebastian, Jünemann, Sebastian, Eikmeyer, Felix, Szczepanowski, Rafael, Al-Soud, Waleed Abu, Sørensen, Søren, Pühler, Alfred, Schlüter, Andreas

“…► First metatranscriptome approach of a biogas-producing microbial community from a production-scale biogas plant. ► Euryarchaeota and Firmicutes are dominant…”
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Metatranscriptomic Analysis Reveals Active Bacterial Communities in Diabetic Foot Infections by Heravi, Fatemah Sadeghpour, Zakrzewski, Martha, Vickery, Karen, Malone, Matthew, Hu, Honghua

“…Despite the extended view of the composition of diabetic foot infections (DFIs), little is known about which transcriptionally active bacterial communities are…”
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Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing by Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Dröge, Marcus, Gartemann, Karl-Heinz, Jünemann, Sebastian, Kaiser, Olaf, Krause, Lutz, Tille, Felix, Zakrzewski, Martha, Pühler, Alfred, Schlüter, Andreas, Goesmann, Alexander

“…Biogas production from renewable resources is attracting increased attention as an alternative energy source due to the limited availability of traditional…”
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Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium by Oey, Harald, Zakrzewski, Martha, Gravermann, Kerstin, Young, Neil D, Korhonen, Pasi K, Gobert, Geoffrey N, Nawaratna, Sujeevi, Hasan, Shihab, Martínez, David M, You, Hong, Lavin, Martin, Jones, Malcolm K, Ragan, Mark A, Stoye, Jens, Oleaga, Ana, Emery, Aidan M, Webster, Bonnie L, Rollinson, David, Gasser, Robin B, McManus, Donald P, Krause, Lutz

“…Mesenteric infection by the parasitic blood fluke Schistosoma bovis is a common veterinary problem in Africa and the Middle East and occasionally in the…”
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Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model by Swe, Pearl M, Zakrzewski, Martha, Kelly, Andrew, Krause, Lutz, Fischer, Katja

“…The resident skin microbiota plays an important role in restricting pathogenic bacteria, thereby protecting the host. Scabies mites (Sarcoptes scabiei) are…”
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Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing by Rademacher, Antje, Zakrzewski, Martha, Schlüter, Andreas, Schönberg, Mandy, Szczepanowski, Rafael, Goesmann, Alexander, Pühler, Alfred, Klocke, Michael

“…Abstract DNAs of two biofilms of a thermophilic two-phase leach-bed biogas reactor fed with rye silage and winter barley straw were sequenced by…”
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Evaluation of Host Immune Response in Diabetic Foot Infection Tissues Using an RNA Sequencing-Based Approach by Heravi, Fatemah Sadeghpour, Zakrzewski, Martha, Aboulkheyr Estarabadi, Hamidreza, Vickery, Karen, Hu, Honghua

“…The normal continuity of skin tissue can be affected by invading pathogens and lead to a series of complicated physiological events. Using an RNA…”
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Co-existence of Network Architectures Supporting the Human Gut Microbiome by Hall, Caitlin V., Lord, Anton, Betzel, Richard, Zakrzewski, Martha, Simms, Lisa A., Zalesky, Andrew, Radford-Smith, Graham, Cocchi, Luca

“…Microbial organisms of the human gut microbiome do not exist in isolation but form complex and diverse interactions to maintain health and reduce risk of…”
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Gene silencing by RNA interference in Sarcoptes scabiei: a molecular tool to identify novel therapeutic targets by Fernando, Deepani D, Marr, Edward J, Zakrzewski, Martha, Reynolds, Simone L, Burgess, Stewart T G, Fischer, Katja

“…Scabies is one of the most common and widespread parasitic skin infections globally, affecting a large range of mammals including humans, yet the molecular…”
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Phylogenetic relationships, stage-specific expression and localisation of a unique family of inactive cysteine proteases in Sarcoptes scabiei by Fernando, Deepani D, Reynolds, Simone L, Zakrzewski, Martha, Mofiz, Ehtesham, Papenfuss, Anthony T, Holt, Deborah, Fischer, Katja

“…Scabies is worldwide one of the most common, yet neglected, parasitic skin infections, affecting a wide range of mammals including humans. Limited treatment…”
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First Description of the Composition and the Functional Capabilities of the Skin Microbial Community Accompanying Severe Scabies Infestation in Humans by Bernigaud, Charlotte, Zakrzewski, Martha, Taylor, Sara, Swe, Pearl M, Papenfuss, Anthony T, Sriprakash, Kadaba S, Holt, Deborah, Chosidow, Olivier, Currie, Bart J, Fischer, Katja

“…Epidemiological studies link infection and impetigo. Scabies mites can promote (Group A ) and infections by breaching the skin barrier and excreting molecules…”
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Comparative metagenomics of biogas-producing microbial communities from production-scale biogas plants operating under wet or dry fermentation conditions by Stolze, Yvonne, Zakrzewski, Martha, Maus, Irena, Eikmeyer, Felix, Jaenicke, Sebastian, Rottmann, Nils, Siebner, Clemens, Pühler, Alfred, Schlüter, Andreas

“…Decomposition of biomass for biogas production can be practiced under wet and dry fermentation conditions. In contrast to the dry fermentation technology, wet…”
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Correction: Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for Laccase-Like Enzymes by Ausec, Luka, Zakrzewski, Martha, Goesmann, Alexander, Schlüter, Andreas, Mandic-Mulec, Ines

“…Citation: Ausec L, Zakrzewski M, Goesmann A, Schlüter A, Mandic-Mulec I (2012) Correction: Bioinformatic Analysis Reveals High Diversity of Bacterial Genes for…”
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