Search Results - "Yu, Zhuohan"
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Topological identification and interpretation for single-cell gene regulation elucidation across multiple platforms using scMGCA
Published in Nature communications (25-01-2023)“…Single-cell RNA sequencing provides high-throughput gene expression information to explore cellular heterogeneity at the individual cell level. A major…”
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Journal Article -
2
Distribution‐Agnostic Deep Learning Enables Accurate Single‐Cell Data Recovery and Transcriptional Regulation Interpretation
Published in Advanced science (01-04-2024)“…Single‐cell RNA sequencing (scRNA‐seq) is a robust method for studying gene expression at the single‐cell level, but accurately quantifying genetic material is…”
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Journal Article -
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Unraveling Spatial Domain Characterization in Spatially Resolved Transcriptomics with Robust Graph Contrastive Clustering
Published in Bioinformatics (Oxford, England) (16-07-2024)“…Spatial transcriptomics can quantify gene expression and its spatial distribution in tissues, thus revealing molecular mechanisms of cellular interactions…”
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scBGEDA: deep single-cell clustering analysis via a dual denoising autoencoder with bipartite graph ensemble clustering
Published in Bioinformatics (Oxford, England) (14-02-2023)“…Single-cell RNA sequencing (scRNA-seq) is an increasingly popular technique for transcriptomic analysis of gene expression at the single-cell level. Cell-type…”
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Journal Article -
5
GMHCC: high-throughput analysis of biomolecular data using graph-based multiple hierarchical consensus clustering
Published in Bioinformatics (26-05-2022)“…Abstract Motivation Thanks to the development of high-throughput sequencing technologies, massive amounts of various biomolecular data have been accumulated to…”
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Journal Article -
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Elucidating transcriptomic profiles from single-cell RNA sequencing data using nature-inspired compressed sensing
Published in Briefings in bioinformatics (02-09-2021)“…Gene-expression profiling can define the cell state and gene-expression pattern of cells at the genetic level in a high-throughput manner. With the development…”
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Journal Article -
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DTtree: A Novel Read/Write-Optimized Learned Index for Database Systems
Published in 2023 IEEE 29th International Conference on Parallel and Distributed Systems (ICPADS) (17-12-2023)“…This paper proposes a novel learned index called DTtree that can optimize both read and write performance. DTtree adopts two novel designs. (1) To improve…”
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Conference Proceeding -
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Design and Construction of a Knowledge Database for Learning Japanese Grammar Using Natural Language Processing and Machine Learning Techniques
Published in 2022 4th International Conference on Natural Language Processing (ICNLP) (01-03-2022)“…This work describes the design and construction of a computer-aided foreign language learning grammar knowledge database for learning Japanese sentence…”
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Conference Proceeding -
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A Corpus-Based Sampling to Build Training Data Set for Extracting Japanese Sentence Pattern
Published in 2022 11th International Conference on Educational and Information Technology (ICEIT) (06-01-2022)“…Training data set plays an important role in Natural Language Processing (NLP) or Machine Learning (ML) Tasks. In the application of NLP in Japanese language…”
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Conference Proceeding