Search Results - "Yona, G"

On Prediction Using Variable Order Markov Models by Begleiter, R., El-Yaniv, R., Yona, G.

“…This paper is concerned with algorithms for prediction of discrete sequences over a finite alphabet, using variable order Markov models. The class of such…”
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ProtoMap: automatic classification of protein sequences and hierarchy of protein families by Yona, G, Linial, N, Linial, M

“…The ProtoMap site offers an exhaustive classification of all proteins in the SWISS-PROT database, into groups of related proteins. The classification is based…”
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Immature myeloid cells derived from mouse placentas and malignant tumors demonstrate similar proangiogenic transcriptional signatures by Fainaru, O, Hantisteanu, S, Ellenbogen, A, Yona, G, Hallak, M

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Within the twilight zone: a sensitive profile-profile comparison tool based on information theory by Yona, Golan, Levitt, Michael

“…This paper presents a novel approach to profile-profile comparison. The method compares two input profiles (like those that are generated by PSI-BLAST) and…”
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Variations on probabilistic suffix trees: statistical modeling and prediction of protein families by Bejerano, Gill, Yona, Golan

“…Motivation: We present a method for modeling protein families by means of probabilistic suffix trees (PSTs). The method is based on identifying significant…”
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BIOZON: a system for unification, management and analysis of heterogeneous biological data by Birkland, Aaron, Yona, Golan

“…Integration of heterogeneous data types is a challenging problem, especially in biology, where the number of databases and data types increase rapidly. Amongst…”
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Automatic prediction of protein domains from sequence information using a hybrid learning system by Nagarajan, Niranjan, Yona, Golan

“…Motivation: We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing…”
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Automatic prediction of protein domains from sequence information using a hybrid learning system by Nagarajan, N, Yona, G

“…Motivation: We describe a novel method for detecting the domain structure of a protein from sequence information alone. The method is based on analyzing…”
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ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space by Yona, Golan, Linial, Nathan, Linial, Michal

“…We investigate the space of all protein sequences in search of clusters of related proteins. Our aim is to automatically detect these sets, and thus obtain a…”
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The URMS-RMS hybrid algorithm for fast and sensitive local protein structure alignment by Yona, Golan, Kedem, Klara

“…We present an efficient and sensitive hybrid algorithm for local structure alignment of a pair of 3D protein structures. The hybrid algorithm employs both the…”
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Hubs of knowledge: using the functional link structure in Biozon to mine for biologically significant entities by Shafer, Paul, Isganitis, Timothy, Yona, Golan

“…Existing biological databases support a variety of queries such as keyword or definition search. However, they do not provide any measure of relevance for the…”
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Automation of gene assignments to metabolic pathways using high-throughput expression data by Popescu, Liviu, Yona, Golan

“…Accurate assignment of genes to pathways is essential in order to understand the functional role of genes and to map the existing pathways in a given genome…”
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Protein family comparison using statistical models and predicted structural information by Chung, Richard, Yona, Golan

“…This paper presents a simple method to increase the sensitivity of protein family comparisons by incorporating secondary structure (SS) information. We build…”
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The distance-profile representation and its application to detection of distantly related protein families by Ku, Chin-Jen, Yona, Golan

“…Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of…”
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Methodologies for target selection in structural genomics by Linial, Michal, Yona, Golan

“…As the number of complete genomes that have been sequenced keeps growing, unknown areas of the protein space are revealed and new horizons open up. Most of…”
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EST2Prot: mapping EST sequences to proteins by Shafer, Paul, Lin, David M, Yona, Golan

“…EST libraries are used in various biological studies, from microarray experiments to proteomic and genetic screens. These libraries usually contain many…”
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Correcting BLAST e-values for low-complexity segments by Sharon, Itai, Birkland, Aaron, Chang, Kuan, El-Yaniv, Ran, Yona, Golan

“…The statistical estimates of BLAST and PSI-BLAST are of extreme importance to determine the biological relevance of sequence matches. While being very…”
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Global self-organization of all known protein sequences reveals inherent biological signatures by Linial, M, Linial, N, Tishby, N, Yona, G

“…A global classification of all currently known protein sequences is performed. Every protein sequence is partitioned into segments of 50 amino acid residues…”
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Topology Search over Biological Databases by Lin Guo, Shanmugasundaram, J., Yona, G.

“…We introduce the notion of a data topology and the problem of topology search over databases. A data topology summarizes the set of all possible relationships…”
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A New Nonparametric Pairwise Clustering Algorithm Based on Iterative Estimation of Distance Profiles by Dubnov, Shlomo, El-yaniv, Ran, Gdalyahu, Yoram, Schneidman, Elad, Tishby, Naftali, Yona, Golan

“…We present a novel pairwise clustering method. Given a proximity matrix of pairwise relations (i.e. pairwise similarity or dissimilarity estimates) between…”
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