Search Results - "Yang, Zamin"

A multifactor analysis of fungal and bacterial community structure in the root microbiome of mature Populus deltoides trees by Shakya, Migun, Gottel, Neil, Castro, Hector, Yang, Zamin K, Gunter, Lee, Labbé, Jessy, Muchero, Wellington, Bonito, Gregory, Vilgalys, Rytas, Tuskan, Gerald, Podar, Mircea, Schadt, Christopher W

“…Bacterial and fungal communities associated with plant roots are central to the host health, survival and growth. However, a robust understanding of the…”
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Distinct and complex bacterial profiles in human periodontitis and health revealed by 16S pyrosequencing by Griffen, Ann L, Beall, Clifford J, Campbell, James H, Firestone, Noah D, Kumar, Purnima S, Yang, Zamin K, Podar, Mircea, Leys, Eugene J

“…Periodontitis has a polymicrobial etiology within the framework of a complex microbial ecosystem. With advances in sequencing technologies, comprehensive…”
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Targeted isolation and cultivation of uncultivated bacteria by reverse genomics by Cross, Karissa L., Campbell, James H., Balachandran, Manasi, Campbell, Alisha G., Cooper, Connor J., Griffen, Ann, Heaton, Matthew, Joshi, Snehal, Klingeman, Dawn, Leys, Eugene, Yang, Zamin, Parks, Jerry M., Podar, Mircea

“…Most microorganisms from all taxonomic levels are uncultured. Single-cell genomes and metagenomes continue to increase the known diversity of Bacteria and…”
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Comparative Analysis of Microbial Diversity Across Temperature Gradients in Hot Springs From Yellowstone and Iceland by Podar, Peter T, Yang, Zamin, Björnsdóttir, Snædís H, Podar, Mircea

“…Geothermal hot springs are a natural setting to study microbial adaptation to a wide range of temperatures reaching up to boiling. Temperature gradients lead…”
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Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities by Shakya, Migun, Quince, Christopher, Campbell, James H., Yang, Zamin K., Schadt, Christopher W., Podar, Mircea

“…Summary Next‐generation sequencing has dramatically changed the landscape of microbial ecology, large‐scale and in‐depth diversity studies being now widely…”
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Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides) by Yip, Daniel Z., Veach, Allison M., Yang, Zamin K., Cregger, Melissa A., Schadt, Christopher W.

“…• While recent reports demonstrate that the direct emission of methane from living tree trunks may be a significant terrestrial emission source, there has been…”
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Microbial community structure of hydrothermal deposits from geochemically different vent fields along the Mid-Atlantic Ridge by Flores, Gilberto E., Campbell, James H., Kirshtein, Julie D., Meneghin, Jennifer, Podar, Mircea, Steinberg, Joshua I., Seewald, Jeffrey S., Tivey, Margaret Kingston, Voytek, Mary A., Yang, Zamin K., Reysenbach, Anna-Louise

“…Summary To evaluate the effects of local fluid geochemistry on microbial communities associated with active hydrothermal vent deposits, we examined the…”
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Host genetic and environmental effects on mouse intestinal microbiota by Campbell, James H, Foster, Carmen M, Vishnivetskaya, Tatiana, Campbell, Alisha G, Yang, Zamin K, Wymore, Ann, Palumbo, Anthony V, Chesler, Elissa J, Podar, Mircea

“…The mammalian gut harbors complex and variable microbial communities, across both host phylogenetic space and conspecific individuals. A synergy of host…”
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Clostridium thermocellum ATCC27405 transcriptomic, metabolomic and proteomic profiles after ethanol stress by Yang, Shihui, Giannone, Richard J, Dice, Lezlee, Yang, Zamin K, Engle, Nancy L, Tschaplinski, Timothy J, Hettich, Robert L, Brown, Steven D

“…Clostridium thermocellum is a candidate consolidated bioprocessing biocatalyst, which is a microorganism that expresses enzymes for both cellulose hydrolysis…”
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Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it depends on soil origin by Veach, Allison M, Morris, Reese, Yip, Daniel Z, Yang, Zamin K, Engle, Nancy L, Cregger, Melissa A, Tschaplinski, Timothy J, Schadt, Christopher W

“…Plants have developed defense strategies for phytopathogen and herbivore protection via coordinated metabolic mechanisms. Low-molecular weight metabolites…”
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Enrichment of Root Endophytic Bacteria from Populus deltoides and Single-Cell-Genomics Analysis by Utturkar, Sagar M, Cude, W Nathan, Robeson, Jr, Michael S, Yang, Zamin K, Klingeman, Dawn M, Land, Miriam L, Allman, Steve L, Lu, Tse-Yuan S, Brown, Steven D, Schadt, Christopher W, Podar, Mircea, Doktycz, Mitchel J, Pelletier, Dale A

“…Bacterial endophytes that colonize Populus trees contribute to nutrient acquisition, prime immunity responses, and directly or indirectly increase both above-…”
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Mercury and Other Heavy Metals Influence Bacterial Community Structure in Contaminated Tennessee Streams by Vishnivetskaya, Tatiana A, Mosher, Jennifer J, Palumbo, Anthony V, Yang, Zamin K, Podar, Mircea, Brown, Steven D, Brooks, Scott C, Gu, Baohua, Southworth, George R, Drake, Meghan M, Brandt, Craig C, Elias, Dwayne A

“…High concentrations of uranium, inorganic mercury [Hg(II)], and methylmercury (MeHg) have been detected in streams located in the Department of Energy…”
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Microbial community stratification linked to utilization of carbohydrates and phosphorus limitation in a boreal peatland at Marcell Experimental Forest, Minnesota, USA by Lin, Xueju, Tfaily, Malak M, Steinweg, J Megan, Chanton, Patrick, Esson, Kaitlin, Yang, Zamin K, Chanton, Jeffrey P, Cooper, William, Schadt, Christopher W, Kostka, Joel E

“…This study investigated the abundance, distribution, and composition of microbial communities at the watershed scale in a boreal peatland within the Marcell…”
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Physiological roles of ArcA, Crp, and EtrA and their interactive control on aerobic and anaerobic respiration in Shewanella oneidensis by Gao, Haichun, Wang, Xiaohu, Yang, Zamin K, Chen, Jingrong, Liang, Yili, Chen, Haijiang, Palzkill, Timothy, Zhou, Jizhong

“…In the genome of Shewanella oneidensis, genes encoding the global regulators ArcA, Crp, and EtrA have been identified. All these proteins deviate from their…”
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Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types by GOTTEL, Neil R, CASTRO, Hector F, DOKTYCZ, Mitchel J, SCHADT, Christopher W, KERLEY, Marilyn, ZAMIN YANG, PELLETIER, Dale A, PODAR, Mircea, KARPINETS, Tatiana, UBERBACHER, Ed, TUSKAN, Gerald A, VILGALYS, Rytas

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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One-time nitrogen fertilization shifts switchgrass soil microbiomes within a context of larger spatial and temporal variation by Chen, Huaihai, Yang, Zamin K, Yip, Dan, Morris, Reese H, Lebreux, Steven J, Cregger, Melissa A, Klingeman, Dawn M, Hui, Dafeng, Hettich, Robert L, Wilhelm, Steven W, Wang, Gangsheng, Löffler, Frank E, Schadt, Christopher W

“…Soil microbiome responses to short-term nitrogen (N) inputs remain uncertain when compared with previous research that has focused on long-term fertilization…”
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Plant Hosts Modify Belowground Microbial Community Response to Extreme Drought by Veach, Allison M., Chen, Huaihai, Yang, Zamin K., Labbe, Audrey D., Engle, Nancy L., Tschaplinski, Timothy J., Schadt, Christopher W., Cregger, Melissa A.

“…Drought stress negatively impacts microbial activity, but the magnitude of stress responses is likely dependent on a diversity of belowground interactions…”
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Probing regulon of ArcA in Shewanella oneidensis MR-1 by integrated genomic analyses by Gao, Haichun, Wang, Xiaohu, Yang, Zamin K, Palzkill, Timothy, Zhou, Jizhong

“…The Arc two-component system is a global regulator controlling many genes involved in aerobic/anaerobic respiration and fermentative metabolism in Escherichia…”
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Development of a clostridia-based cell-free system for prototyping genetic parts and metabolic pathways by Krüger, Antje, Mueller, Alexander P., Rybnicky, Grant A., Engle, Nancy L., Yang, Zamin K., Tschaplinski, Timothy J., Simpson, Sean D., Köpke, Michael, Jewett, Michael C.

“…Gas fermentation by autotrophic bacteria, such as clostridia, offers a sustainable path to numerous bioproducts from a range of local, highly abundant, waste…”
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Hexavalent chromium reduction under fermentative conditions with lactate stimulated native microbial communities by Somenahally, Anil C, Mosher, Jennifer J, Yuan, Tong, Podar, Mircea, Phelps, Tommy J, Brown, Steven D, Yang, Zamin K, Hazen, Terry C, Arkin, Adam P, Palumbo, Anthony V, Van Nostrand, Joy D, Zhou, Jizhong, Elias, Dwayne A

“…Microbial reduction of toxic hexavalent chromium (Cr(VI)) in-situ is a plausible bioremediation strategy in electron-acceptor limited environments. However,…”
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