Search Results - "Xu, Zhenjiang Z"

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism by Zarrinpar, Amir, Chaix, Amandine, Xu, Zhenjiang Z., Chang, Max W., Marotz, Clarisse A., Saghatelian, Alan, Knight, Rob, Panda, Satchidananda

“…Antibiotic-induced microbiome depletion (AIMD) has been used frequently to study the role of the gut microbiome in pathological conditions. However, unlike…”
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A gut microbiome signature for cirrhosis due to nonalcoholic fatty liver disease by Caussy, Cyrielle, Tripathi, Anupriya, Humphrey, Greg, Bassirian, Shirin, Singh, Seema, Faulkner, Claire, Bettencourt, Ricki, Rizo, Emily, Richards, Lisa, Xu, Zhenjiang Z., Downes, Michael R., Evans, Ronald M., Brenner, David A., Sirlin, Claude B., Knight, Rob, Loomba, Rohit

“…The presence of cirrhosis in nonalcoholic-fatty-liver-disease (NAFLD) is the most important predictor of liver-related mortality. Limited data exist concerning…”
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Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea by Zhu, Qiyun, Mai, Uyen, Pfeiffer, Wayne, Janssen, Stefan, Asnicar, Francesco, Sanders, Jon G., Belda-Ferre, Pedro, Al-Ghalith, Gabriel A., Kopylova, Evguenia, McDonald, Daniel, Kosciolek, Tomasz, Yin, John B., Huang, Shi, Salam, Nimaichand, Jiao, Jian-Yu, Wu, Zijun, Xu, Zhenjiang Z., Cantrell, Kalen, Yang, Yimeng, Sayyari, Erfan, Rabiee, Maryam, Morton, James T., Podell, Sheila, Knights, Dan, Li, Wen-Jun, Huttenhower, Curtis, Segata, Nicola, Smarr, Larry, Mirarab, Siavash, Knight, Rob

“…Rapid growth of genome data provides opportunities for updating microbial evolutionary relationships, but this is challenged by the discordant evolution of…”
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Identification of new high affinity targets for Roquin based on structural conservation by Braun, Johannes, Fischer, Sandra, Xu, Zhenjiang Z, Sun, Hongying, Ghoneim, Dalia H, Gimbel, Anna T, Plessmann, Uwe, Urlaub, Henning, Mathews, David H, Weigand, Julia E

“…Abstract Post-transcriptional gene regulation controls the amount of protein produced from a specific mRNA by altering both its decay and translation rates…”
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Microbiome-wide association studies link dynamic microbial consortia to disease by Gilbert, Jack A., Quinn, Robert A., Debelius, Justine, Xu, Zhenjiang Z., Morton, James, Garg, Neha, Jansson, Janet K., Dorrestein, Pieter C., Knight, Rob

“…Rapid advances in DNA sequencing, metabolomics, proteomics and computational tools are dramatically increasing access to the microbiome and identification of…”
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Best practices for analysing microbiomes by Knight, Rob, Vrbanac, Alison, Taylor, Bryn C., Aksenov, Alexander, Callewaert, Chris, Debelius, Justine, Gonzalez, Antonio, Kosciolek, Tomasz, McCall, Laura-Isobel, McDonald, Daniel, Melnik, Alexey V., Morton, James T., Navas, Jose, Quinn, Robert A., Sanders, Jon G., Swafford, Austin D., Thompson, Luke R., Tripathi, Anupriya, Xu, Zhenjiang Z., Zaneveld, Jesse R., Zhu, Qiyun, Caporaso, J. Gregory, Dorrestein, Pieter C.

“…Complex microbial communities shape the dynamics of various environments, ranging from the mammalian gastrointestinal tract to the soil. Advances in DNA…”
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Microbiome Tools for Forensic Science by Metcalf, Jessica L, Xu, Zhenjiang Z, Bouslimani, Amina, Dorrestein, Pieter, Carter, David O, Knight, Rob

“…Microbes are present at every crime scene and have been used as physical evidence for over a century. Advances in DNA sequencing and computational approaches…”
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Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads by Sanders, Jon G, Nurk, Sergey, Salido, Rodolfo A, Minich, Jeremiah, Xu, Zhenjiang Z, Zhu, Qiyun, Martino, Cameron, Fedarko, Marcus, Arthur, Timothy D, Chen, Feng, Boland, Brigid S, Humphrey, Greg C, Brennan, Caitriona, Sanders, Karenina, Gaffney, James, Jepsen, Kristen, Khosroheidari, Mahdieh, Green, Cliff, Liyanage, Marlon, Dang, Jason W, Phelan, Vanessa V, Quinn, Robert A, Bankevich, Anton, Chang, John T, Rana, Tariq M, Conrad, Douglas J, Sandborn, William J, Smarr, Larry, Dorrestein, Pieter C, Pevzner, Pavel A, Knight, Rob

“…As metagenomic studies move to increasing numbers of samples, communities like the human gut may benefit more from the assembly of abundant microbes in many…”
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Microbiome-wide association studies link dynamic microbial consortia to disease by Gilbert, Jack A., Quinn, Robert A., Debelius, Justine, Xu, Zhenjiang Z., Morton, James, Garg, Neha, Jansson, Janet K., Dorrestein, Pieter C., Knight, Rob

“…Rapid advances in DNA sequencing, metabolomics, proteomics and computational tools are dramatically increasing access to the microbiome and identification of…”
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