Search Results - "Xiao, Chuan"

Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data by Liu, Qian, Fang, Li, Yu, Guoliang, Wang, Depeng, Xiao, Chuan-Le, Wang, Kai

“…DNA base modifications, such as C5-methylcytosine (5mC) and N6-methyldeoxyadenosine (6mA), are important types of epigenetic regulations. Short-read bisulfite…”
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Analyzing Energy Materials by Cryogenic Electron Microscopy by Ren, Xiao‐Chuan, Zhang, Xue‐Qiang, Xu, Rui, Huang, Jia‐Qi, Zhang, Qiang

“…Safe and high‐energy‐density rechargeable batteries are increasingly indispensable in the pursuit of a wireless and fossil‐free society. Advancements in…”
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PCRLB for batch discrete‐time estimation through state decoupling by Bao, Xiao‐Chuan, Luo, Ji‐An

“…This letter aims to obtain a closed‐form performance metric using the smoothing posterior Cramér–Rao lower bound (PCRLB) for a class of direct discrete‐time…”
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Efficient assembly of nanopore reads via highly accurate and intact error correction by Chen, Ying, Nie, Fan, Xie, Shang-Qian, Zheng, Ying-Feng, Dai, Qi, Bray, Thomas, Wang, Yao-Xin, Xing, Jian-Feng, Huang, Zhi-Jian, Wang, De-Peng, He, Li-Juan, Luo, Feng, Wang, Jian-Xin, Liu, Yi-Zhi, Xiao, Chuan-Le

“…Long nanopore reads are advantageous in de novo genome assembly. However, nanopore reads usually have broad error distribution and high-error-rate…”
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Two-level additive Schwarz methods for three-dimensional unsteady Stokes flows in patient-specific arteries with parameterized one-dimensional central-line coarse preconditioner by Liu, Yingzhi, Cai, Xiao-Chuan

“…We consider the numerical solution of unsteady Stokes equations in patient-specific arterial-like domains in 3D. A Stokes-like solver is a necessary component…”
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An inner‐outer subcycling algorithm for parallel cardiac electrophysiology simulations by Laudenschlager, Sebastian, Cai, Xiao‐Chuan

“…This paper explores cardiac electrophysiological simulations of the monodomain equations and introduces a novel subcycling time integration algorithm to…”
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Stability of direct and inverse scattering problems for the self-adjoint Schrödinger operators on the half-line by Xu, Xiao-Chuan

“…The self-adjoint Schrödinger operators on the half-line with the real-valued potential are investigated. The estimates for the difference of the reflection…”
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MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads by Xiao, Chuan-Le, Chen, Ying, Xie, Shang-Qian, Chen, Kai-Ning, Wang, Yan, Han, Yue, Luo, Feng, Xie, Zhi

“…MECAT combines fast alignment with error correction and de novo assembly for the processing of long single-molecule reads derived from large genomes. We…”
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A scalable nonlinear fluid–structure interaction solver based on a Schwarz preconditioner with isogeometric unstructured coarse spaces in 3D by Kong, Fande, Cai, Xiao-Chuan

“…Nonlinear fluid–structure interaction (FSI) problems on unstructured meshes in 3D appear in many applications in science and engineering, such as vibration…”
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DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning by Ni, Peng, Huang, Neng, Zhang, Zhi, Wang, De-Peng, Liang, Fan, Miao, Yu, Xiao, Chuan-Le, Luo, Feng, Wang, Jianxin

“…Abstract Motivation The Oxford Nanopore sequencing enables to directly detect methylation states of bases in DNA from reads without extra laboratory…”
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Fusing 2D and 3D convolutional neural networks for the segmentation of aorta and coronary arteries from CT images by Gu, Linyan, Cai, Xiao-Chuan

“…Automated segmentation of three-dimensional medical images is of great importance for the detection and quantification of certain diseases such as stenosis in…”
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Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning by Ni, Peng, Huang, Neng, Nie, Fan, Zhang, Jun, Zhang, Zhi, Wu, Bo, Bai, Lu, Liu, Wende, Xiao, Chuan-Le, Luo, Feng, Wang, Jianxin

“…In plants, cytosine DNA methylations (5mCs) can happen in three sequence contexts as CpG, CHG, and CHH (where H = A, C, or T), which play different roles in…”
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Domain decomposed classification algorithms based on linear discriminant analysis: An optimality theory and applications by Li, Jingwei, Cai, Xiao-Chuan

“…Linear discriminant analysis (LDA) is a popular technique for supervised classification problems, and it works quite well when the number of classes is small,…”
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Simulation of unsteady blood flows in a patient‐specific compliant pulmonary artery with a highly parallel monolithically coupled fluid‐structure interaction algorithm by Kong, Fande, Kheyfets, Vitaly, Finol, Ender, Cai, Xiao‐Chuan

“…Computational fluid dynamics (CFD) is increasingly used to study blood flows in patient‐specific arteries for understanding certain cardiovascular diseases…”
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A recycling preconditioning method with auxiliary tip subspace for elastic crack propagation simulation using XFEM by Chen, Xingding, Cai, Xiao-Chuan

“…In this paper, we propose a recycling preconditioning method with auxiliary tip subspace for solving a sequence of highly ill-conditioned linear systems of…”
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An aneurysm‐specific preconditioning technique for the acceleration of Newton‐Krylov method with application in the simulation of blood flows by Liu, Yingzhi, Qi, Fenfen, Cai, Xiao‐Chuan

“…In this paper, we develop an algorithm to simulate blood flows in aneurysmal arteries and focus on the construction of robust and efficient multilevel…”
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Summation pollution of principal component analysis and an improved algorithm for location sensitive data by Li, Jingwei, Cai, Xiao‐Chuan

“…Principal component analysis (PCA) is widely used for dimensionality reduction and unsupervised learning. The reconstruction error is sometimes large even when…”
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Design of Cu‐Substituted O3‐Type NaFe0.5Mn0.5O2 Cathode Materials for Sodium‐Ion Batteries by Wang, Jia‐Lin, Wu, Lin‐Rong, Zhang, Hai‐Xia, Wang, Hao‐Rui, Zhang, Ding, Duan, Xiao‐Chuan

“…O3‐type Fe/Mn‐based layered oxide cathode materials with abundant reserves have a promising prospect in sodium‐ion batteries. However, the electrochemical…”
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Large eddy simulation of the wind flow in a realistic full-scale urban community with a scalable parallel algorithm by Yan, Zhengzheng, Chen, Rongliang, Cai, Xiao-Chuan

“…Turbulence and large computational domains make urban wind flow simulation a computationally challenging problem. To reduce the total simulation time and…”
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Integral Equation Based Domain Decomposition Method for Solving Electromagnetic Wave Scattering From Non-Penetrable Objects by ZHEN PENG, WANG, Xiao-Chuan, LEE, Jin-Fa

“…The integral equation (IE) method is commonly utilized to model time-harmonic electromagnetic (EM) problems. One of the greatest challenges in its applications…”
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