Search Results - "Wu, Songfeng"

Molecular evolution in different subtypes of multifocal hepatocellular carcinoma by Tang, Xia, Xiang, Lei, Li, Qingshu, Shao, Yue, Wan, Li, Zhao, Dachun, Li, Xiaoyuan, Wu, Songfeng, Wang, Haijian, Li, Dewei, Ding, Keyue

“…Background Multifocal hepatocellular carcinoma (MF-HCC) accounts for > 40% of HCCs, exhibiting a poor prognosis than single primary HCCs. Characterizing…”
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Longitudinal Serum Proteome Characterization of COVID-19 Patients With Different Severities Revealed Potential Therapeutic Strategies by Wu, Songfeng, Xu, Yuan, Zhang, Jian, Ran, Xiaoju, Jia, Xue, Wang, Jing, Sun, Longqin, Yang, Huan, Li, Yulei, Fu, Bin, Huang, Changwu, Liao, Pu, Sun, Wei

“…The COVID-19 pandemic caused by SARS-CoV-2 is exerting huge pressure on global healthcare. Understanding of the molecular pathophysiological alterations in…”
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Proteome Analysis of Hepatocellular Carcinoma by Two-dimensional Difference Gel Electrophoresis by Sun, Wei, Xing, Baocai, Sun, Yi, Du, Xiaojuan, Lu, Min, Hao, Chunyi, Lu, Zhuang, Mi, Wei, Wu, Songfeng, Wei, Handong, Gao, Xue, Zhu, Yunping, Jiang, Ying, Qian, Xiaohong, He, Fuchu

“…Hepatocellular carcinoma (HCC) is a highly malignant tumor, and chronic infection with hepatitis B virus is one of its major risk factors. To identify the…”
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BioLadder: A bioinformatic platform primarily focused on proteomic data analysis by Zhang, Yupeng, Yang, Chunyuan, Wang, Jinhao, Wang, Lixin, Zhao, Yan, Sun, Longqing, Sun, Wei, Zhu, Yunping, Li, Jingli, Wu, Songfeng

“…BioLadder (https://www.bioladder.cn/) is an online data analysis platform designed for proteomics research, which includes three classes of experimental data…”
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Functional proteomic analysis of nonalcoholic fatty liver disease in rat models: Enoyl–coenzyme a hydratase down‐regulation exacerbates hepatic steatosis by Zhang, Xuequn, Yang, Juntao, Guo, Yuanbiao, Ye, Hua, Yu, Chaohui, Xu, Chengfu, Xu, Lei, Wu, Songfeng, Sun, Wei, Wei, Hangdong, Gao, Xue, Zhu, Yunping, Qian, Xiaohong, Jiang, Ying, Li, Youming, He, Fuchu

“…Nonalcoholic fatty liver disease (NAFLD) has emerged as a common public health problem that can progress to end‐stage liver disease. A high‐fat diet (HFD) may…”
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Validation of a multi-omics strategy for prioritizing personalized candidate driver genes by Liang, Li, Song, Liting, Yang, Yi, Tian, Ling, Li, Xiaoyuan, Wu, Songfeng, Huang, Wenxun, Ren, Hong, Tang, Ni, Ding, Keyue

“…Significant heterogeneity between different tumors prevents the discovery of cancer driver genes, especially in a patient-specific manner. We previously…”
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PepDistiller: A quality control tool to improve the sensitivity and accuracy of peptide identifications in shotgun proteomics by Li, Ning, Wu, Songfeng, Zhang, Chengpu, Chang, Cheng, Zhang, Jiyang, Ma, Jie, Li, Liwei, Qian, Xiaohong, Xu, Ping, Zhu, Yunping, He, Fuchu

“…In this study, we presented a quality control tool named PepDistiller to facilitate the validation of MASCOT search results. By including the number of tryptic…”
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Bayesian Nonparametric Model for the Validation of Peptide Identification in Shotgun Proteomics by Zhang, Jiyang, Ma, Jie, Dou, Lei, Wu, Songfeng, Qian, Xiaohong, Xie, Hongwei, Zhu, Yunping, He, Fuchu

“…Tandem mass spectrometry combined with database searching allows high throughput identification of peptides in shotgun proteomics. However, validating database…”
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Relationships between hematopoiesis and hepatogenesis in the midtrimester fetal liver characterized by dynamic transcriptomic and proteomic profiles by Guo, Yuanbiao, Zhang, Xuequn, Huang, Jian, Zeng, Yan, Liu, Wei, Geng, Chao, Li, Ka Wan, Yang, Dong, Wu, Songfeng, Wei, Handong, Han, Zeguang, Qian, Xiaohong, Jiang, Ying, He, Fuchu

“…In fetal hematopoietic organs, the switch from hematopoiesis is hypothesized to be a critical time point for organogenesis, but it is not yet evidenced. The…”
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Regular patterns for proteome-wide distribution of protein abundance across species by Zhong, Fan, Yang, Dong, Hao, Yunwei, Lin, Chengzhao, Jiang, Ying, Ying, Wantao, Wu, Songfeng, Zhu, Yunping, Liu, Siqi, Yang, Pengyuan, Qian, Xiaohong, He, Fuchu

“…A proteome of the bio-entity, including cell, tissue, organ, and organism, consists of proteins of diverse abundance. The principle that determines the…”
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Improving the sensitivity of MASCOT search results validation by combining new features with Bayesian nonparametric model by Ma, Jie, Zhang, Jiyang, Wu, Songfeng, Li, Dong, Zhu, Yunping, He, Fuchu

“…The probability‐based search engine MASCOT has been widely used to identify peptides and proteins in shotgun proteomic research. Most subsequent quality…”
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Computational identification of rare codons of Escherichia coli based on codon pairs preference by Wu, Xianming, Wu, Songfeng, Li, Dong, Zhang, Jiyang, Hou, Lin, Ma, Jie, Liu, Wanlin, Ren, Daming, Zhu, Yunping, He, Fuchu

“…Codon bias is believed to play an important role in the control of gene expression. In Escherichia coli, some rare codons, which can limit the expression level…”
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Analysis of human liver proteome using replicate shotgun strategy by Chen, Ming, Ying, Wantao, Song, Yanping, Liu, Xin, Yang, Bing, Wu, Songfeng, Jiang, Ying, Cai, Yun, He, Fuchu, Qian, Xiaohong

“…In this study, a liquid‐based shotgun strategy was used to comprehensively identify the expression of human liver proteome. Proteins were extracted from human…”
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A Dataset of Human Fetal Liver Proteome Identified by Subcellular Fractionation and Multiple Protein Separation and Identification Technology by Ying, Wantao, Jiang, Ying, Guo, Lihai, Hao, Yunwei, Zhang, Yangjun, Wu, Songfeng, Zhong, Fan, Wang, Jinglan, Shi, Rong, Li, Dong, Wan, Ping, Li, Xiaohai, Wei, Handong, Li, Jianqi, Wang, Zhongsheng, Xue, Xiaofang, Cai, Yun, Zhu, Yunping, Qian, Xiaohong, He, Fuchu

“…A high throughput process including subcellular fractionation and multiple protein separation and identification technology allowed us to establish the protein…”
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Multi-modality of pI distribution in whole proteome by Wu, Songfeng, Wan, Ping, Li, Jianqi, Li, Dong, Zhu, Yunping, He, Fuchu

“…Multi‐modality of pI distribution is a common feature in different whole proteomes. Some researchers considered it relate to the proteins with different…”
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Asia Oceania Human Proteome Organisation Membrane Proteomics Initiative. Preparation and characterisation of the carbonate‐washed membrane standard by Peng, Lifeng, Kapp, Eugene A, Fenyö, David, Kwon, Min‐Seok, Jiang, Pu, Wu, Songfeng, Jiang, Ying, Aguilar, Marie‐Isabel, Ahmed, Nikhat, Baker, Mark S, Cai, Zongwei, Chen, Yu‐Ju, Van Chi, Phan, Chung, Maxey C.M, He, Fuchu, Len, Alice C.L, Liao, Pao‐Chi, Nakamura, Kazuyuki, Ngai, Sai Ming, Paik, Young‐Ki, Pan, Tai‐Long, Poon, Terence C.W, Hosseini Salekdeh, Ghasem, Simpson, Richard J, Sirdeshmukh, Ravi, Srisomsap, Chantragan, Svasti, Jisnuson, Tyan, Yu‐Chang, Dreyer, Florian S, McLauchlan, Danyl, Rawson, Pisana, Jordan, T. William

“…The Asia Oceania Human Proteome Organisation (AOHUPO) has embarked on a Membrane Proteomics Initiative with goals of systematic comparison of strategies for…”
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Proteomic analysis on structural proteins of Severe Acute Respiratory Syndrome coronavirus by Ying, Wantao, Hao, Yunwei, Zhang, Yangjun, Peng, Wenming, Qin, Ede, Cai, Yun, Wei, Kaihua, Wang, Jie, Chang, Guohui, Sun, Wei, Dai, Shujia, Li, Xiaohai, Zhu, Yunping, Li, Jianqi, Wu, Songfeng, Guo, Lihai, Dai, Jingquan, Wang, Jinglan, Wan, Ping, Chen, Tinggui, Du, Chunjuan, Li, Dong, Wan, Jia, Kuai, Xuezhang, Li, Weihua, Shi, Rong, Wei, Handong, Cao, Cheng, Yu, Man, Liu, Hong, Dong, Fangting, Wang, Donggen, Zhang, Xuemin, Qian, Xiaohong, Zhu, Qingyu, He, Fuchu

“…Recently, a new coronavirus was isolated from the lung tissue of autopsy sample and nasal/throat swabs of the patients with Severe Acute Respiratory Syndrome…”
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iProX: an integrated proteome resource by Ma, Jie, Chen, Tao, Wu, Songfeng, Yang, Chunyuan, Bai, Mingze, Shu, Kunxian, Li, Kenli, Zhang, Guoqing, Jin, Zhong, He, Fuchu, Hermjakob, Henning, Zhu, Yunping

“…Abstract Sharing of research data in public repositories has become best practice in academia. With the accumulation of massive data, network bandwidth and…”
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Protein probabilities in shotgun proteomics: Evaluating different estimation methods using a semi-random sampling model by Xue, Xiaofang, Wu, Songfeng, Wang, Zhongsheng, Zhu, Yunping, He, Fuchu

“…The calculation of protein probabilities is one of the most intractable problems in large‐scale proteomic research. Current available estimating methods, for…”
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iProX in 2021: connecting proteomics data sharing with big data by Chen, Tao, Ma, Jie, Liu, Yi, Chen, Zhiguang, Xiao, Nong, Lu, Yutong, Fu, Yinjin, Yang, Chunyuan, Li, Mansheng, Wu, Songfeng, Wang, Xue, Li, Dongsheng, He, Fuchu, Hermjakob, Henning, Zhu, Yunping

“…Abstract The rapid development of proteomics studies has resulted in large volumes of experimental data. The emergence of big data platform provides the…”
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