Search Results - "Wortman, J R"

Mobile genes in the human microbiome are structured from global to individual scales by Brito, I. L., Yilmaz, S., Huang, K., Xu, L., Jupiter, S. D., Jenkins, A. P., Naisilisili, W., Tamminen, M., Smillie, C. S., Wortman, J. R., Birren, B. W., Xavier, R. J., Blainey, P. C., Singh, A. K., Gevers, D., Alm, E. J.

“…Mobile genes, which can be transferred between bacterial species in the microbiome to impart properties such as antibiotic resistance, are reflective of human…”
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Healing of erosions in rheumatoid arthritis remains elusive: results with 24 months of the anabolic agent teriparatide by Duryea, J, Gravallese, E M, Wortman, J R, Xu, C, Lu, B, Kay, J, Solomon, D H

“…Erosion healing in rheumatoid arthritis (RA) is difficult to demonstrate. This extension study aimed to determine whether 2 years of teriparatide (TPTD)…”
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Whole genome comparison of Aspergillus flavus and A. oryzae by Payne, G. A., Nierman, W. C., Wortman, J. R., Pritchard, B. L., Brown, D., Dean, R. A., Bhatnagar, D, Cleveland, T. E., Machida, Masayuki, Yu, J.

“…Aspergillus flavus is a plant and animal pathogen that also produces the potent carcinogen aflatoxin. Aspergillus oryzae is a closely related species that has…”
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Corrigendum: Mobile genes in the human microbiome are structured from global to individual scales by Brito, I L, Yilmaz, S, Huang, K, Xu, L, Jupiter, S D, Jenkins, A P, Naisilisili, W, Tamminen, M, Smillie, C S, Wortman, J R, Birren, B W, Xavier, R J, Blainey, P C, Singh, A K, Gevers, D, Alm, E J

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Intervention strategies for microbial therapeutics in cancer immunotherapy by Gopalakrishnan, V., Weiner, B., Ford, C.B., Sellman, B.R., Hammond, S.A., Freeman, D.J., Dennis, P., Soria, J-C., Wortman, J.R., Henn, M.R.

“…Immunotherapies have drastically improved clinical outcomes in a wide range of malignancies. Nevertheless, patient responses remain highly variable, and…”
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What can comparative genomics tell us about species concepts in the genus Aspergillus? by Rokas, A., Payne, G., Fedorova, N.D., Baker, S.E., Machida, M., Yu, J., Georgianna, D. Ryan, Dean, Ralph A., Bhatnagar, Deepak, Cleveland, T.E., Wortman, J.R., Maiti, R., Joardar, V., Amedeo, P., Denning, D.W., Nierman, W.C.

“…Understanding the nature of species” boundaries is a fundamental question in evolutionary biology. The availability of genomes from several species of the…”
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Whole genome comparison of the A. fumigatus family by Wortman, J. R., Fedorova, N., Crabtree, J., Joardar, V., Maiti, R., Haas, B. J., Amedeo, P., Lee, E., Angiuoli, S. V., Jiang, B., Anderson, M. J., Denning, D. W., White, O. R., Nierman, W. C.

“…The availability of the genome sequences of multiple Aspergillus spp. presents the research community with an unprecedented opportunity for discovery. The…”
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The Aspergillus Genome Database (AspGD): recent developments in comprehensive multispecies curation, comparative genomics and community resources by Arnaud, Martha B., Cerqueira, Gustavo C., Inglis, Diane O., Skrzypek, Marek S., Binkley, Jonathan, Chibucos, Marcus C., Crabtree, Jonathan, Howarth, Clinton, Orvis, Joshua, Shah, Prachi, Wymore, Farrell, Binkley, Gail, Miyasato, Stuart R., Simison, Matt, Sherlock, Gavin, Wortman, Jennifer R.

“…The Aspergillus Genome Database (AspGD; http://www.aspgd.org) is a freely available, web-based resource for researchers studying fungi of the genus…”
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Correction: Corrigendum: Mobile genes in the human microbiome are structured from global to individual scales by Brito, I. L., Yilmaz, S., Huang, K., Xu, L., Jupiter, S. D., Jenkins, A. P., Naisilisili, W., Tamminen, M., Smillie, C. S., Wortman, J. R., Birren, B. W., Xavier, R. J., Blainey, P. C., Singh, A. K., Gevers, D., Alm, E. J.

“…Nature 535, 435–439 (2016); doi:10.1038/nature18927 In this Letter, there were many errors in the reference citations. The original ref. 6 (Parks et al., 2015)…”
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Erratum: Corrigendum: Mobile genes in the human microbiome are structured from global to individual scales by Brito, I. L., Yilmaz, S., Huang, K., Xu, L., Jupiter, S. D., Jenkins, A. P., Naisilisili, W., Tamminen, M., Smillie, C. S., Wortman, J. R., Birren, B. W., Xavier, R. J., Blainey, P. C., Singh, A. K., Gevers, D., Alm, E. J.

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Comparative genomics of recent Shiga toxin-producing Escherichia coli O104:H4: short-term evolution of an emerging pathogen by Grad, Yonatan H, Godfrey, Paul, Cerquiera, Gustavo C, Mariani-Kurkdjian, Patricia, Gouali, Malika, Bingen, Edouard, Shea, Terrence P, Haas, Brian J, Griggs, Allison, Young, Sarah, Zeng, Qiandong, Lipsitch, Marc, Waldor, Matthew K, Weill, François-Xavier, Wortman, Jennifer R, Hanage, William P

“…The large outbreak of diarrhea and hemolytic uremic syndrome (HUS) caused by Shiga toxin-producing Escherichia coli O104:H4 in Europe from May to July 2011…”
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Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies by Haas, Brian J., Delcher, Arthur L., Mount, Stephen M., Wortman, Jennifer R., Smith Jr, Roger K., Hannick, Linda I., Maiti, Rama, Ronning, Catherine M., Rusch, Douglas B., Town, Christopher D., Salzberg, Steven L., White, Owen

“…The spliced alignment of expressed sequence data to genomic sequence has proven a key tool in the comprehensive annotation of genes in eukaryotic genomes. A…”
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Identification and Characterization of a p53 Homologue in Drosophila melanogaster by Jin, Shengkan, Martinek, Sebastian, Joo, Woo S., Wortman, Jennifer R., Mirkovic, Nebojsa, Sali, Andrej, Yandell, Mark D., Pavletich, Nikola P., Young, Michael W., Levine, Arnold J.

“…The tumor suppressor gene p53 in mammalian cells plays a critical role in safeguarding the integrity of genome. It functions as a sequence-specific…”
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Comparative Genomics of Trypanosomatid Parasitic Protozoa by El-Sayed, Najib M, Myler, Peter J, Blandin, Gae̊lle, Berriman, Matthew, Crabtree, Jonathan, Aggarwal, Gautam, Caler, Elisabet, Renauld, Hubert, Worthey, Elizabeth A, Hertz-Fowler, Christiane, Ghedin, Elodie, Peacock, Christopher, Bartholomeu, Daniella C, Haas, Brian J, Tran, Anh-Nhi, Wortman, Jennifer R, Alsmark, U. Cecilia M, Angiuoli, Samuel, Anupama, Atashi, Badger, Jonathan, Bringaud, Frederic, Cadag, Eithon, Carlton, Jane M, Cerqueira, Gustavo C, Creasy, Todd, Delcher, Arthur L, Djikeng, Appolinaire, Embley, T. Martin, Hauser, Christopher, Ivens, Alasdair C, Kummerfeld, Sarah K, Pereira-Leal, Jose B, Nilsson, Daniel, Peterson, Jeremy, Salzberg, Steven L, Shallom, Joshua, Silva, Joana C, Sundaram, Jaideep, Westenberger, Scott, White, Owen, Melville, Sara E, Donelson, John E, Andersson, Björn, Stuart, Kenneth D, Hall, Neil

“…A comparison of gene content and genome architecture of Trypanosoma brucei, Trypanosoma cruzi, and Leishmania major, three related pathogens with different…”
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Formation and metabolism of histone mRNAs with mutant 3' ends formed by snRNA termination signals by Ingledue, T, Ramamurthy, L, Wortman, J R, Kay, B K, Marzluff, W F

“…Histone mRNAs are the only non-polyadenylated mRNAs, ending in a conserved 26 nt sequence which can form a stem-loop. It has not been possible to make histone…”
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Genomics of Aspergillus fumigatus by Ronning, Catherine M., Fedorova, Natalie D., Bowyer, Paul, Coulson, Richard, Goldman, Gustavo, Stanley Kim, H., Turner, Geoffrey, Wortman, Jennifer R., Yu, Jiujiang, Anderson, Michael J., Denning, David W., Nierman, William C.

“…Aspergillus fumigatus is a filamentous fungal saprophyte that is ubiquitous in the environment. It is also a human pathogen and induces allergenic response,…”
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Comparative genomics of the eukaryotes : The drosophilia genome by RUBIN, G. M, YANDELL, M. D, CHERRY, J. M, HENIKOFF, S, SKUPSKI, M. P, MISRA, S, ASHBURNER, M, BIRNEY, E, BOGUSKI, M. S, BRODY, T, BROKSTEIN, P, CELNIKER, S. E, WORTMAN, J. R, CHERVITZ, S. A, COATES, D, CRAVCHIK, A, GABRIELIAN, A, GALLE, R. F, GELBART, W. M, GEORGE, R. A, GOLDSTEIN, L. S. B, FANGCHENG GONG, PING GUAN, MIKLOS, G. L. G, HARRIS, N. L, HAY, B. A, HOSKINS, R. A, JIAYIN LI, ZHENYA LI, HYNES, R. O, JONES, S. J. M, KUEHL, P. M, LEMAITRE, B, LITTLETON, J. T, NELSON, C. R, MORRISON, D. K, MUNGALL, C, O'FARRELL, P. H, PICKERAL, O. K, SHUE, C, VOSSHALL, L. B, JIONG ZHANG, QI ZHAO, ZHENG, X. H, FEI ZHONG, HARIHARAN, I. K, WENYAN ZHONG, GIBBS, R, VENTER, J. C, ADAMS, M. D, LEWIS, S, FORTINI, M. E, LI, P. W, APWEILER, R, FLEISCHMANN, W

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Healing of erosions in rheumatoid arthritis remains elusive: results with 24 months of the anabolic agent teriparatide by Duryea, J, Gravallese, EM, Wortman, JR, Xu, C, Lu, B, Kay, J, Solomon, DH

“…Objective: Erosion healing in rheumatoid arthritis (RA) is difficult to demonstrate. This extension study aimed to determine whether 2 years of teriparatide…”
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The genome sequence of Drosophila melanogaster : The drosophilia genome by ADAMS, M. D, CELNIKER, S. E, GEORGE, R. A, LEWIS, S. E, RICHARDS, S, ASHBURNER, M, HENDERSON, S. N, SUTTON, G. G, WORTMAN, J. R, YANDELL, M. D, ZHANG, Q, CHEN, L. X, HOLT, R. A, BRANDON, R. C, ROGERS, Y.-H. C, BLAZEJ, R. G, CHAMPE, M, PFEIFFER, B. D, WAN, K. H, DOYLE, C, BAXTER, E. G, HELT, G, NELSON, C. R, EVANS, C. A, MIKLOS, G. L. G, ABRIL, J. F, AGBAYANI, A, AN, H.-J, ANDREWS-PFANNKOCH, C, BALDWIN, D, BALLEW, R. M, BASU, A, BAXENDALE, J, BAYRAKTAROGLU, L, GOCAYNE, J. D, BEASLEY, E. M, BEESON, K. Y, BENOS, P, BERMAN, B. P, BHANDARI, D, BOLSHAKOV, S, BORKOVA, D, BOTCHAN, M. R, BOUCK, J, BROKSTEIN, P, AMANATIDES, P. G, BROTTIER, P, BURTIS, K. C, BUSAM, D. A, BUTLER, H, CADIEU, E, CENTER, A, CHANDRA, I, CHERRY, J. M, CAWLEY, S, DAHLKE, C, SCHERER, S. E, LI, P. W, HOSKINS, R. A, GALLE, R. F

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