Search Results - "Wooley, John"

A primer on metagenomics by Wooley, John C, Godzik, Adam, Friedberg, Iddo

“…Metagenomics is a discipline that enables the genomic study of uncultured microorganisms. Faster, cheaper sequencing technologies and the ability to sequence…”
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Metagenomics： Facts and Artifacts, and Computational Challenges by Wooley, John C., Ye, Yuzhen

“…Metagenomics is the study of microbial communities sampled directly from their natural environment, without prior culturing. By enabling an analysis of…”
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The Genomic Standards Consortium by Field, Dawn, Amaral-Zettler, Linda, Cochrane, Guy, Cole, James R, Dawyndt, Peter, Garrity, George M, Gilbert, Jack, Glöckner, Frank Oliver, Hirschman, Lynette, Karsch-Mizrachi, Ilene, Klenk, Hans-Peter, Knight, Rob, Kottmann, Renzo, Kyrpides, Nikos, Meyer, Folker, San Gil, Inigo, Sansone, Susanna-Assunta, Schriml, Lynn M, Sterk, Peter, Tatusova, Tatiana, Ussery, David W, White, Owen, Wooley, John

“…A vast and rich body of information has grown up as a result of the world's enthusiasm for 'omics technologies. Finding ways to describe and make available…”
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Expansion of the protein repertoire in newly explored environments: human gut microbiome specific protein families by Ellrott, Kyle, Jaroszewski, Lukasz, Li, Weizhong, Wooley, John C, Godzik, Adam

“…The microbes that inhabit particular environments must be able to perform molecular functions that provide them with a competitive advantage to thrive in those…”
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CARD8 and NLRP1 undergo autoproteolytic processing through a ZU5-like domain by D'Osualdo, Andrea, Weichenberger, Christian X, Wagner, Roland N, Godzik, Adam, Wooley, John, Reed, John C

“…The "Function to Find Domain" (FIIND)-containing proteins CARD8 (Cardinal; Tucan) and NLRP1 (NALP1; NAC) are well known components of inflammasomes,…”
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Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies by Walls, Ramona L, Deck, John, Guralnick, Robert, Baskauf, Steve, Beaman, Reed, Blum, Stanley, Bowers, Shawn, Buttigieg, Pier Luigi, Davies, Neil, Endresen, Dag, Gandolfo, Maria Alejandra, Hanner, Robert, Janning, Alyssa, Krishtalka, Leonard, Matsunaga, Andréa, Midford, Peter, Morrison, Norman, Ó Tuama, Éamonn, Schildhauer, Mark, Smith, Barry, Stucky, Brian J, Thomer, Andrea, Wieczorek, John, Whitacre, Jamie, Wooley, John

“…The study of biodiversity spans many disciplines and includes data pertaining to species distributions and abundances, genetic sequences, trait measurements,…”
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Probing metagenomics by rapid cluster analysis of very large datasets by Li, Weizhong, Wooley, John C, Godzik, Adam

“…The scale and diversity of metagenomic sequencing projects challenge both our technical and conceptual approaches in gene and genome annotations. The recent…”
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Advances in biodiversity: metagenomics and the unveiling of biological dark matter by Robbins, Robert J, Krishtalka, Leonard, Wooley, John C

“…Efforts to harmonize genomic data standards used by the biodiversity and metagenomic research communities have shown that prokaryotic data cannot be understood…”
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Exploration of uncharted regions of the protein universe by Jaroszewski, Lukasz, Li, Zhanwen, Krishna, S Sri, Bakolitsa, Constantina, Wooley, John, Deacon, Ashley M, Wilson, Ian A, Godzik, Adam

“…The genome projects have unearthed an enormous diversity of genes of unknown function that are still awaiting biological and biochemical characterization…”
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The United States of America and scientific research by Hather, Gregory J, Haynes, Winston, Higdon, Roger, Kolker, Natali, Stewart, Elizabeth A, Arzberger, Peter, Chain, Patrick, Field, Dawn, Franza, B Robert, Lin, Biaoyang, Meyer, Folker, Ozdemir, Vural, Smith, Charles V, van Belle, Gerald, Wooley, John, Kolker, Eugene

“…To gauge the current commitment to scientific research in the United States of America (US), we compared federal research funding (FRF) with the US gross…”
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TOPSAN: a collaborative annotation environment for structural genomics by Weekes, Dana, Krishna, S Sri, Bakolitsa, Constantina, Wilson, Ian A, Godzik, Adam, Wooley, John

“…Many protein structures determined in high-throughput structural genomics centers, despite their significant novelty and importance, are available only as PDB…”
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The JCSG high-throughput structural biology pipeline by Elsliger, Marc-André, Deacon, Ashley M., Godzik, Adam, Lesley, Scott A., Wooley, John, Wüthrich, Kurt, Wilson, Ian A.

“…The Joint Center for Structural Genomics high‐throughput structural biology pipeline has delivered more than 1000 structures to the community over the past ten…”
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The founding charter of the Genomic Observatories Network by Davies, Neil, Field, Dawn, Amaral-Zettler, Linda, Clark, Melody S, Deck, John, Drummond, Alexei, Faith, Daniel P, Geller, Jonathan, Gilbert, Jack, Glöckner, Frank Oliver, Hirsch, Penny R, Leong, Jo-Ann, Meyer, Chris, Obst, Matthias, Planes, Serge, Scholin, Chris, Vogler, Alfried P, Gates, Ruth D, Toonen, Rob, Berteaux-Lecellier, Véronique, Barbier, Michèle, Barker, Katherine, Bertilsson, Stefan, Bicak, Mesude, Bietz, Matthew J, Bobe, Jason, Bodrossy, Levente, Borja, Angel, Coddington, Jonathan, Fuhrman, Jed, Gerdts, Gunnar, Gillespie, Rosemary, Goodwin, Kelly, Hanson, Paul C, Hero, Jean-Marc, Hoekman, David, Jansson, Janet, Jeanthon, Christian, Kao, Rebecca, Klindworth, Anna, Knight, Rob, Kottmann, Renzo, Koo, Michelle S, Kotoulas, Georgios, Lowe, Andrew J, Marteinsson, Viggó Thór, Meyer, Folker, Morrison, Norman, Myrold, David D, Pafilis, Evangelos, Parker, Stephanie, Parnell, John Jacob, Polymenakou, Paraskevi N, Ratnasingham, Sujeevan, Roderick, George K, Rodriguez-Ezpeleta, Naiara, Schonrogge, Karsten, Simon, Nathalie, Valette-Silver, Nathalie J, Springer, Yuri P, Stone, Graham N, Stones-Havas, Steve, Sansone, Susanna-Assunta, Thibault, Kate M, Wecker, Patricia, Wichels, Antje, Wooley, John C, Yahara, Tetsukazu, Zingone, Adriana

“…The co-authors of this paper hereby state their intention to work together to launch the Genomic Observatories Network (GOs Network) for which this document…”
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The grand challenge: facing up to proteomics by Wooley, John C

“…The annual Bioforums international meeting titled ‘Proteomics: using and identifying proteins to optimize drug discovery and development’, was held 15–17…”
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Indoor chemistry: ozone, volatile organic compounds, and carpets by Weschler, Charles J, Hodgson, Alfred T, Wooley, John D

“…Under typical indoor conditions, ozone is shown to alter the concentrations of vapor-phase organic compounds in freshly carpeted stainless-steel rooms…”
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Lethal aortic dissection in a 33-week parturient: a case report by Wooley, 2nd, John G, Redmon, Valerie Wynn, Groom, Jeffery

“…Aortic dissection is a rare and potentially lethal complication of pregnancy. After an extensive review of the currently available medical journal databases, a…”
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Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 Å resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate by Xu, Qingping, Saikatendu, Kumar Singh, Krishna, S. Sri, McMullan, Daniel, Abdubek, Polat, Agarwalla, Sanjay, Ambing, Eileen, Astakhova, Tamara, Axelrod, Herbert L., Carlton, Dennis, Chiu, Hsiu-Ju, Clayton, Thomas, DiDonato, Michael, Duan, Lian, Elsliger, Marc-André, Feuerhelm, Julie, Grzechnik, Slawomir K., Hale, Joanna, Hampton, Eric, Han, Gye Won, Haugen, Justin, Jaroszewski, Lukasz, Jin, Kevin K., Klock, Heath E., Knuth, Mark W., Koesema, Eric, Miller, Mitchell D., Morse, Andrew T., Nigoghossian, Edward, Okach, Linda, Oommachen, Silvya, Paulsen, Jessica, Reyes, Ron, Rife, Christopher L., Schwarzenbacher, Robert, van den Bedem, Henry, White, Aprilfawn, Wolf, Guenter, Hodgson, Keith O., Wooley, John, Deacon, Ashley M., Godzik, Adam, Lesley, Scott A., Wilson, Ian A.

“…No abastract…”
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Nuclear matrix-like filaments and fibrogranular complexes form through the rearrangement of specific nuclear ribonucleoproteins by Tan, J H, Wooley, J C, LeStourgeon, W M

“…The behavior of nuclear pre-mRNA-binding proteins after their nuclease and/or salt-induced release from RNA was investigated. After RNase digestion or salt…”
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Ultrafast clustering algorithms for metagenomic sequence analysis by Li, Weizhong, Fu, Limin, Niu, Beifang, Wu, Sitao, Wooley, John

“…The rapid advances of high-throughput sequencing technologies dramatically prompted metagenomic studies of microbial communities that exist at various…”
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Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource by Sun, Shulei, Chen, Jing, Li, Weizhong, Altintas, Ilkay, Lin, Abel, Peltier, Steve, Stocks, Karen, Allen, Eric E, Ellisman, Mark, Grethe, Jeffrey, Wooley, John

“…The Community Cyberinfrastructure for Advanced Microbial Ecology Research and Analysis (CAMERA, http://camera.calit2.net/) is a database and associated…”
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