Search Results - "Woicik, Addie"

Multilingual translation for zero-shot biomedical classification using BioTranslator by Xu, Hanwen, Woicik, Addie, Poon, Hoifung, Altman, Russ B., Wang, Sheng

“…Existing annotation paradigms rely on controlled vocabularies, where each data instance is classified into one term from a predefined set of controlled…”
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Gemini: memory-efficient integration of hundreds of gene networks with high-order pooling by Woicik, Addie, Zhang, Mingxin, Xu, Hanwen, Mostafavi, Sara, Wang, Sheng

“…Abstract Motivation The exponential growth of genomic sequencing data has created ever-expanding repositories of gene networks. Unsupervised network…”
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Enhancing Hi-C contact matrices for loop detection with Capricorn: a multiview diffusion model by Fang, Tangqi, Liu, Yifeng, Woicik, Addie, Lu, Minsi, Jha, Anupama, Wang, Xiao, Li, Gang, Hristov, Borislav, Liu, Zixuan, Xu, Hanwen, Noble, William S, Wang, Sheng

“…Abstract Motivation High-resolution Hi-C contact matrices reveal the detailed three-dimensional architecture of the genome, but high-coverage experimental Hi-C…”
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Abstract 6183: Exploring the role of microenvironment context on diagnostic accuracy in tissue microarray core selection by Woicik, Addie, McCaw, Zachary R., Dulken, Ben, Probert, Christopher

“…Abstract Background: Tissue Microarrays (TMAs) stand to significantly improve the efficiency of multiplex spatial studies by including core samples taken from…”
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Integrating socio-economic vulnerability factors improves neighborhood-scale wastewater-based epidemiology for public health applications by Saingam, Prakit, Jain, Tanisha, Woicik, Addie, Li, Bo, Candry, Pieter, Redcorn, Raymond, Wang, Sheng, Himmelfarb, Jonathan, Bryan, Andrew, Gattuso, Meghan, Winkler, Mari K.H.

“…•Population demographics used as key WBE variable to predict COVID-19 and Post-COVID sequela.•Clinical, wastewater, and demographics data used to train machine…”
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Extrapolating heterogeneous time-series gene expression data using Sagittarius by Woicik, Addie, Zhang, Mingxin, Chan, Janelle, Ma, Jianzhu, Wang, Sheng

“…Understanding the temporal dynamics of gene expression is crucial for developmental biology, tumour biology and biogerontology. However, some timepoints remain…”
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Multi-Artifact Detection and Filtering in Digital Pathology Using Intrinsic Image Properties by Kanwar, Varun, Woicik, Addie, Dulken, Benjamin, Probert, Christopher, McCaw, Zachary R

“…Digital pathology images, particularly whole slide images (WSIs), often contain macro-scale artifacts such as tissue folds, out-of-focus regions, and pen…”
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In Silico Optimization of Tissue Microarray Design for Machine Learning Analysis by Woicik, Addie, McCaw, Zachary R, Akle, Santiago, Dulken, Benjamin, Narayanan, Sanjana, Probert, Christopher

“…Machine learning (ML) methods based on histopathology slides are increasingly used for cancer diagnosis and treatment. Analyses with specialized experimental…”
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BLIAM: Literature-based Data Synthesis for Synergistic Drug Combination Prediction by Yang, Cai, Woicik, Addie, Poon, Hoifung, Wang, Sheng

“…Language models pre-trained on scientific literature corpora have substantially advanced scientific discovery by offering high-quality feature representations…”
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OCTCube: A 3D foundation model for optical coherence tomography that improves cross-dataset, cross-disease, cross-device and cross-modality analysis by Liu, Zixuan, Xu, Hanwen, Woicik, Addie, Shapiro, Linda G, Blazes, Marian, Wu, Yue, Lee, Cecilia S, Lee, Aaron Y, Wang, Sheng

“…Optical coherence tomography (OCT) has become critical for diagnosing retinal diseases as it enables 3D images of the retina and optic nerve. OCT acquisition…”
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