Search Results - "Wipat, A."

Standard virtual biological parts: a repository of modular modeling components for synthetic biology by Cooling, M. T., Rouilly, V., Misirli, G., Lawson, J., Yu, T., Hallinan, J., Wipat, A.

“…Motivation: Fabrication of synthetic biological systems is greatly enhanced by incorporating engineering design principles and techniques such as…”
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Species-Specific Detection of C. difficile Using Targeted Antibody Design by Lawry, B. M, Johnson, C. L, Flanagan, K, Spoors, J. A, McNeil, C. J, Wipat, A, Keegan, N

“…Clostridium difficile is a Gram-positive, spore-forming bacterium that continues to present a worldwide problem in healthcare settings. The bacterium causes…”
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A Genomewide Suppressor and Enhancer Analysis of cdc13-1 Reveals Varied Cellular Processes Influencing Telomere Capping in Saccharomyces cerevisiae by Addinall, S. G, Downey, M, Yu, M, Zubko, M. K, Dewar, J, Leake, A, Hallinan, J, Shaw, O, James, K, Wilkinson, D. J, Wipat, A, Durocher, D, Lydall, D

“…In Saccharomyces cerevisiae, Cdc13 binds telomeric DNA to recruit telomerase and to "cap" chromosome ends. In temperature-sensitive cdc13-1 mutants telomeric…”
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Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features by Rusakovica, J., Hallinan, J., Wipat, A., Zuliani, P.

“…The spread of drug resistance amongst clinically-important bacteria is a serious, and growing, problem [1]. However, the analysis of entire genomes requires…”
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Network approaches to the functional analysis of microbial proteins by Hallinan, J S, James, K, Wipat, A

“…Large amounts of detailed biological data have been generated over the past few decades. Much of these data is freely available in over 1000 online databases;…”
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SARGE: a tool for creation of putative genetic networks by Shaw, O. J., Harwood, C., Steggles, L. J., Wipat, A.

“…SARGE is a tool for creating, visualizing and manipulating a putative genetic network from time series microarray data. The tool assigns potential edges…”
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Exploring Microbial Genome Sequences to Identify Protein Families on the Grid by Yudong Sun, Wipat, A., Pocock, M., Lee, P.A., Flanagan, K., Worthington, J.T.

“…The analysis of microbial genome sequences can identify protein families that provide potential drug targets for new antibiotics. With the rapid accumulation…”
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Taverna: a tool for the composition and enactment of bioinformatics workflows by Oinn, Tom, Addis, Matthew, Ferris, Justin, Marvin, Darren, Senger, Martin, Greenwood, Mark, Carver, Tim, Glover, Kevin, Pocock, Matthew R., Wipat, Anil, Li, Peter

“…Motivation: In silico experiments in bioinformatics involve the co-ordinated use of computational tools and information repositories. A growing number of these…”
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dnaB-pheA (256 degrees - 240 degrees) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism by Wipat, A, Carter, N, Brignell, S.C, Guy, B.J, Piper, K, Sanders, J, Emmerson, P.T, Harwood, C.R

“…Within the framework of the international programme to sequence the genome of Bacillus subtilis strain 168, we were allocated the region between dnaB (256…”
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Evolutionary computation for the design of a stochastic switch for synthetic genetic circuits by Hallinan, J S, Misirli, G, Wipat, A

“…Biological systems are inherently stochastic, a fact which is often ignored when simulating genetic circuits. Synthetic biology aims to design genetic circuits…”
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Streptomyces marker plasmids for monitoring survival and spread of Streptomycetes in soil by Wipat, A. (Liverpool Polytechnic, Liverpool), Wellington, E.M.H, Saunders, V.A

“…Plasmid constructs pNW1 through pNW6 containing a controllable xylE gene (for catechol 2,3-dioxygenase) were introduced into Streptomyces lividans strains to…”
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Monoclonal antibodies for Streptomyces lividans and their use for immunomagnetic capture of spores from soil by Wipat, A, Wellington, E.M.H, Saunders, V.A

“…Monoclonal antibodies were produced to Streptomyces lividans spore surface antigens. One particular hybridoma cell line, 43H6, produced a monoclonal antibody…”
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Data mining the human gut microbiota for therapeutic targets by Collison, Matthew, Hirt, Robert P, Wipat, Anil, Nakjang, Sirintra, Sanseau, Philippe, Brown, James R

“…It is well known that microbes have an intricate role in human health and disease. However, targeted strategies for modulating human health through the…”
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Probabilistic Latent Semantic Analysis Applied to Whole Bacterial Genomes Identifies Common Genomic Features by Rusakovica, J., Hallinan, J., Wipat, A., Zuliani, P.

“…The spread of drug resistance amongst clinically-important bacteria is a serious, and growing, problem [1]. However, the analysis of entire genomes requires…”
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Genome-Wide Transcriptional Analysis of the Phosphate Starvation Stimulon of Bacillus subtilis by ALLENBY, Nicholas E. E, O'CONNOR, Nicola, PRAGAI, Zoltan, WARD, Alan C, WIPAT, Anil, HARWOOD, Colin R

“…Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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The extracellular and cytoplasmic proteomes of the non-virulent Bacillus anthracis strain UM23C1-2 by Antelmann, Haike, Williams, Rachel C., Miethke, Marcus, Wipat, Anil, Albrecht, Dirk, Harwood, Colin R., Hecker, Michael

“…The recently published genome sequence of Bacillus anthracis Ames has facilitated the prediction of proteins associated with the virulence of this bacterium…”
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The Bacillus subtilis genome sequence: the molecular blueprint of a soil bacterium by Wipat, Anil, Harwood, Colin R

“…The rate at which entire microbial genomes are being sequenced has accelerated rapidly over the past two years, promising to revolutionise our understanding of…”
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Post-transcriptional regulation of the Bacillus subtilis pst operon encoding a phosphate-specific ABC transporter by Allenby, Nicholas E. E, O'Connor, Nicola, Pragai, Zoltan, Carter, Noel M, Miethke, Marcus, Engelmann, Susanne, Hecker, Michael, Wipat, Anil, Ward, Alan C, Harwood, Colin R

“…1 School of Biology, University of Newcastle upon Tyne, Newcastle upon Tyne NE2 4HH, UK 2 School of Cell and Molecular Biosciences, University of Newcastle…”
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On the use of agents in a BioInformatics grid by Moreau, L., Miles, S., Goble, C., Greenwood, M., Dialani, V., Addis, M., Alpdemir, N., Cawley, R., De Roure, D., Ferris, J., Gaizauskas, R., Glover, K., Greenhalgh, C., Li, P., Xiaojian Liu, Lord, P., Luck, M., Marvin, D., Oinn, T., Paton, N., Pettifer, S., Radenkovic, M.V., Roberts, A., Robinson, A., Rodden, T., Senger, M., Sharman, N., Stevens, R., Warboys, B., Wipat, A., Wroe, C.

“…My Grid is an e-Science Grid project that aims to help biologists and bioinformaticians to perform workflow-based in silico experiments, and help them to…”
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Sequencing and functional analysis of the genome of Bacillus subtilis strain 168 by Harwood, Colin R., Wipat, Anil

“…The international programme to sequence the 4.2 Mb genome of Bacillus subtilis, a model Gram-positive bacterium, is a joint project involving European,…”
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