Search Results - "Wingender, E."

TRANSFAC[superscript ®] and its module TRANSCompel[superscript ®]: transcriptional gene regulation in eukaryotes by Matys, V, Kel-Margoulis, O. V, Fricke, E, Liebich, I, Land, S, Barre-Dirrie, A, Reuter, I, Chekmenev, D, Krull, M, Hornischer, K, Voss, N, Stegmaier, P, Lewicki-Potapov, B, Saxel, H, Kel, A. E, Wingender, E

“…The TRANSFAC[superscript ®] database on transcription factors, their binding sites, nucleotide distribution matrices and regulated genes as well as the…”
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TRANSFAC: an integrated system for gene expression regulation by Wingender, E, Chen, X, Hehl, R, Karas, H, Liebich, I, Matys, V, Meinhardt, T, Prüss, M, Reuter, I, Schacherer, F

“…TRANSFAC is a database on transcription factors, their genomic binding sites and DNA-binding profiles (http://transfac.gbf.de/TRANSFAC/). Its content has been…”
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MATCH: A tool for searching transcription factor binding sites in DNA sequences by Kel, A E, Gössling, E, Reuter, I, Cheremushkin, E, Kel-Margoulis, O V, Wingender, E

“…Match is a weight matrix-based tool for searching putative transcription factor binding sites in DNA sequences. Match is closely interconnected and distributed…”
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TRANSFAC®: transcriptional regulation, from patterns to profiles by Matys, V., Fricke, E., Geffers, R., Gößling, E., Haubrock, M., Hehl, R., Hornischer, K., Karas, D., Kel, A. E., Kel-Margoulis, O. V., Kloos, D.-U., Land, S., Lewicki-Potapov, B., Michael, H., Münch, R., Reuter, I., Rotert, S., Saxel, H., Scheer, M., Thiele, S., Wingender, E.

“…The TRANSFAC® database on eukaryotic transcriptional regulation, comprising data on transcription factors, their target genes and regulatory binding sites, has…”
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The TRANSFAC system on gene expression regulation by Wingender, E, Chen, X, Fricke, E, Geffers, R, Hehl, R, Liebich, I, Krull, M, Matys, V, Michael, H, Ohnhäuser, R, Prüss, M, Schacherer, F, Thiele, S, Urbach, S

“…The TRANSFAC database on transcription factors and their DNA-binding sites and profiles (http://www.gene-regulation.de/) has been quantitatively extended and…”
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TRANSFAC: A Database on Transcription Factors and Their DNA Binding Sites by Wingender, E., Dietze, P., Karas, H., Knüppel, R.

“…TRANSFAC is a database about eukaryotic transcription regulating DNA sequence elements and the transcription factors binding to and acting through them. This…”
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Expanding the TRANSFAC database towards an expert system of regulatory molecular mechanisms by Heinemeyer, T., Chen, X., Karas, H., Kel, A. E., Kel, O. V., Liebich, I., Meinhardt, T., Reuter, I., Schacherer, F., Wingender, E.

“…TRANSFAC is a database on transcription factors, their genomic binding sites and DNA-binding profiles. In addition to being updated and extended by new…”
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Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL by Heinemeyer, T., Wingender, E., Reuter, I., Hermjakob, H., Kel, A. E., Kel, O. V., Ignatieva, E. V., Ananko, E. A., Podkolodnaya, O. A., Kolpakov, F. A., Podkolodny, N. L., Kolchanov, N. A.

“…TRANSFAC, TRRD (Transcription Regulatory Region Database) and COMPEL are databases which store information about transcriptional regulation in eukaryotic…”
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Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm by Waleev, T, Shtokalo, D, Konovalova, T, Voss, N, Cheremushkin, E, Stegmaier, P, Kel-Margoulis, O, Wingender, E, Kel, A

“…Composite Module Analyst (CMA) is a novel software tool aiming to identify promoter-enhancer models based on the composition of transcription factor (TF)…”
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Composite Module Analyst: a fitness-based tool for identification of transcription factor binding site combinations by Kel, A., Konovalova, T., Waleev, T., Cheremushkin, E., Kel-Margoulis, O., Wingender, E.

“…Motivation: Functionally related genes involved in the same molecular-genetic, biochemical or physiological process are often regulated coordinately. Such…”
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The TRANSFAC system on gene expression regulation by Wingender, E.

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The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation by Wingender, Edgar

“…Since its beginning as a data collection more than 20 years ago, the TRANSFAC project underwent an evolution to become the basis for a complex platform for the…”
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Evaluation of sequence motifs found in scaffold/matrix‐attached regions (S/MARs) by Liebich, I., Bode, J., Reuter, I., Wingender, E.

“…Based on the contents of the database S/MARt DB, the most comprehensive data collection of scaffold/matrix‐attached regions (S/MARs) publicly available thus…”
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ExPlain™: finding upstream drug targets in disease gene regulatory networks by Kel, A., Voss, N., Valeev, T., Stegmaier, P., Kel-Margoulis, O., Wingender, E.

“…Different signal transduction pathways leading to the activation of transcription factors (TFs) converge at key molecules that master the regulation of many…”
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EndoNet: an information resource about regulatory networks of cell-to-cell communication by Dönitz, Jürgen, Goemann, Björn, Lizé, Muriel, Michael, Holger, Sasse, Nicole, Wingender, Edgar, Potapov, Anatolij P

“…EndoNet is an information resource about intercellular regulatory communication. It provides information about hormones, hormone receptors, the sources (i.e…”
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Recognition of multiple patterns in unaligned sets of sequences: comparison of kernel clustering method with other methods by Kel, A., Tikunov, Y., Voss, N., Wingender, E.

“…Motivation: Transcription factor binding sites often differ significantly in their primary sequence and can hardly be aligned. Often one set of sites can…”
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TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation by Wingender, E., Kel, A. E., Kel, O. V., Karas, H., Heinemeyer, T., Dietze, P., Knüppel, R., Romaschenko, A. G., Kolchanov, N. A.

“…Three databases that provide data on transcriptional regulation are described. TRANSFAC is a database on transcription factors and their DNA binding sites…”
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Transcription regulatory region analysis using signal detection and fuzzy clustering by PICKERT, L, REUTER, I, KLAWONN, F, WINGENDER, E

“…Presently available programs for the recognition of potential transcription factor binding sites in genomic sequences generally yield a huge amount of output…”
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MATCHTM: a tool for searching transcription factor binding sites in DNA sequences by Kel, A.E., Gößling, E., Reuter, I., Cheremushkin, E., Kel-Margoulis, O.V., Wingender, E.

“…MatchTM is a weight matrix-based tool for searching putative transcription factor binding sites in DNA sequences. MatchTM is closely interconnected and…”
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Transcription regulating proteins and their recognition sequences by Wingender, E

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