Search Results - "Willmann, Matthew R."

Threshold-dependent repression of SPL gene expression by miR156/miR157 controls vegetative phase change in Arabidopsis thaliana by He, Jia, Xu, Mingli, Willmann, Matthew R, McCormick, Kevin, Hu, Tieqiang, Yang, Li, Starker, Colby G, Voytas, Daniel F, Meyers, Blake C, Poethig, R Scott

“…Vegetative phase change is regulated by a decrease in the abundance of the miRNAs, miR156 and miR157, and the resulting increase in the expression of their…”
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Genome-Wide Mapping of Uncapped and Cleaved Transcripts Reveals a Role for the Nuclear mRNA Cap-Binding Complex in Cotranslational RNA Decay in Arabidopsis by Yu, Xiang, Willmann, Matthew R., Anderson, Stephen J., Gregory, Brian D.

“…RNA turnover is necessary for controlling proper mRNA levels posttranscriptionally. In general, RNA degradation is via exoribonucleases that degrade RNA either…”
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MicroRNAs Regulate the Timing of Embryo Maturation in Arabidopsis by Willmann, Matthew R., Mehalick, Andrew J., Packer, Rachel L., Jenik, Pablo D.

“…The seed is a key evolutionary adaptation of land plants that facilitates dispersal and allows for germination when the environmental conditions are adequate…”
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Conservation and evolution of miRNA regulatory programs in plant development by Willmann, Matthew R, Poethig, R Scott

“…Over the past two years, microarray technologies, large-scale small RNA and whole genome sequencing projects, and data mining have provided a wealth of…”
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Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis by Hunter, Christine, Willmann, Matthew R, Wu, Gang, Yoshikawa, Manabu, de la Luz Gutiérrez-Nava, María, Poethig, Scott R

“…Mutations in the ARGONAUTE gene ZIPPY(ZIP)/AGO7 in Arabidopsis accelerate the juvenile-to-adult transition. A screen for mutations that suppress this…”
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Cyclophilin 40 is required for microRNA activity in Arabidopsis by Smith, Michael R, Willmann, Matthew R, Wu, Gang, Berardini, Tanya Z, Möller, Barbara, Weijers, Dolf, Poethig, R. Scott

“…Loss-of-function mutations of SQUINT (SQN)--which encodes the Arabidopsis orthologue of cyclophilin 40 (CyP40)--cause the precocious expression of adult…”
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Calcium Signaling through Protein Kinases. The Arabidopsis Calcium-Dependent Protein Kinase Gene Family by Shu-Hua Cheng, Willmann, Matthew R., Chen, Huei-Chi, Sheen, Jen

“…In plants, numerous Ca2+-stimulated protein kinase activities occur through calcium-dependent protein kinases (CDPKs). These novel calcium sensors are likely…”
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Spelling Changes and Fluorescent Tagging With Prime Editing Vectors for Plants by Wang, Li, Kaya, Hilal Betul, Zhang, Ning, Rai, Rhitu, Willmann, Matthew R, Carpenter, Sara C D, Read, Andrew C, Martin, Federico, Fei, Zhangjun, Leach, Jan E, Martin, Gregory B, Bogdanove, Adam J

“…Prime editing is an adaptation of the CRISPR-Cas system that uses a Cas9(H840A)-reverse transcriptase fusion and a guide RNA amended with template and primer…”
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Global Analysis of RNA-Dependent RNA Polymerase-Dependent Small RNAs Reveals New Substrates and Functions for These Proteins and SGS3 in Arabidopsis by Hua, Xia, Berkowitz, Nathan D, Willmann, Matthew R, Yu, Xiang, Lyons, Eric, Gregory, Brian D

“…RNA silencing pathways control eukaryotic gene expression transcriptionally or posttranscriptionally in a sequence-specific manner. In RNA silencing, the…”
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Identifying genes associated with abiotic stress tolerance suitable for CRISPR/Cas9 editing in upland rice cultivars adapted to acid soils by Barrero, Luz S., Willmann, Matthew R., Craft, Eric J., Akther, Kazi M., Harrington, Sandra E., Garzon‐Martinez, Gina A., Glahn, Raymond P., Piñeros, Miguel A., McCouch, Susan R.

“…Five genes of large phenotypic effect known to confer abiotic stress tolerance in rice were selected to characterize allelic variation in commercial Colombian…”
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Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments by McCormick, Kevin P, Willmann, Matthew R, Meyers, Blake C

“…Prior to the advent of new, deep sequencing methods, small RNA (sRNA) discovery was dependent on Sanger sequencing, which was time-consuming and limited…”
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Differential innate immune signalling via Ca(2+) sensor protein kinases by Boudsocq, Marie, Willmann, Matthew R, McCormack, Matthew, Lee, Horim, Shan, Libo, He, Ping, Bush, Jenifer, Cheng, Shu-Hua, Sheen, Jen

“…Innate immunity represents the first line of inducible defence against microbial infection in plants and animals. In both kingdoms, recognition of pathogen- or…”
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Is there a role for trihelix transcription factors in embryo maturation? by Barr, Melissa S, Willmann, Matthew R, Jenik, Pablo D

“…The development of the angiosperm seed includes the accumulation of storage products, the loss of most of its water and the establishment of dormancy. While…”
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Differential innate immune signalling via Ca2+ sensor protein kinases by Boudsocq, Marie, Willmann, Matthew R., McCormack, Matthew, Lee, Horim, Shan, Libo, He, Ping, Bush, Jenifer, Cheng, Shu-Hua, Sheen, Jen

“…Calcium sensing pivotal in innate immunity Plants and animals sense the invasion of pathogens using pattern recognition receptors that recognize diverse…”
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Messenger RNA 5′ NAD+ Capping Is a Dynamic Regulatory Epitranscriptome Mark That Is Required for Proper Response to Abscisic Acid in Arabidopsis by Yu, Xiang, Willmann, Matthew R., Vandivier, Lee E., Trefely, Sophie, Kramer, Marianne C., Shapiro, Jeffrey, Guo, Rong, Lyons, Eric, Snyder, Nathaniel W., Gregory, Brian D.

“…Although eukaryotic messenger RNAs (mRNAs) normally possess a 5′ end N7-methyl guanosine (m7G) cap, a non-canonical 5′ nicotinamide adenine dinucleotide (NAD+)…”
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Regulatory Impact of RNA Secondary Structure across the Arabidopsis Transcriptome by Li, Fan, Zheng, Qi, Vandivier, Lee E., Willmann, Matthew R., Chen, Ying, Gregory, Brian D.

“…The secondary structure of an RNA molecule plays an integral role in its maturation, regulation, and function. However, the global influence of this feature on…”
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The effect of the floral repressor FLC on the timing and progression of vegetative phase change in Arabidopsis by Willmann, Matthew R, Poethig, R Scott

“…Plants undergo two major post-embryonic developmental transitions--the juvenile-to-adult vegetative transition (vegetative phase change) and the…”
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The Arabidopsis Mediator CDK8 module genes CCT (MED12) and GCT (MED13) are global regulators of developmental phase transitions by Gillmor, C Stewart, Silva-Ortega, Claudia O, Willmann, Matthew R, Buendía-Monreal, Manuel, Poethig, R Scott

“…Temporal coordination of developmental programs is necessary for normal ontogeny, but the mechanism by which this is accomplished is still poorly understood…”
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Base Editors and Off-Targeting: The Deaminase Matters by Willmann, Matthew R

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Global Regulation of Embryonic Patterning in Arabidopsis by MicroRNAs by Seefried, William F., Willmann, Matthew R., Clausen, Rachel L., Jenik, Pablo D.

“…The development of the embryo in Arabidopsis (Arabidopsis thaliana) involves a carefully controlled set of cell divisions and cell fate decisions that lead to…”
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