Search Results - "Wiegreffe, Daniel"

A layout framework for genome-wide multiple sequence alignment graphs by Schebera, Jeremias, Zeckzer, Dirk, Wiegreffe, Daniel

“…Sequence alignments are often used to analyze genomic data. However, such alignments are often only calculated and compared on small sequence intervals for…”
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Masakari: visualization supported statistical analysis of genome segmentations by Zeckzer, Dirk, Hausdorf, Alrik, Hinzmann, Nicole, Müller, Lydia, Wiegreffe, Daniel

“…In epigenetics, the change of the combination of histone modifications at the same genomic location during cell differentiation is of great interest for…”
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The Sierra Platinum Service for generating peak-calls for replicated ChIP-seq experiments by Wiegreffe, Daniel, Müller, Lydia, Steuck, Jens, Zeckzer, Dirk, Stadler, Peter F

“…Sierra Platinum is a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and -steering. The required computing…”
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RNApuzzler: efficient outerplanar drawing of RNA-secondary structures by Wiegreffe, Daniel, Alexander, Daniel, Stadler, Peter F, Zeckzer, Dirk

“…Abstract Motivation RNA secondary structure is a useful representation for studying the function of RNA, which captures most of the free energy of RNA folding…”
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MutationExplorer: a webserver for mutation of proteins and 3D visualization of energetic impacts by Philipp, Michelle, Moth, Christopher W, Ristic, Nikola, Tiemann, Johanna K S, Seufert, Florian, Panfilova, Aleksandra, Meiler, Jens, Hildebrand, Peter W, Stein, Amelie, Wiegreffe, Daniel, Staritzbichler, René

“…The possible effects of mutations on stability and function of a protein can only be understood in the context of protein 3D structure. The…”
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MDsrv: visual sharing and analysis of molecular dynamics simulations by Kampfrath, Michelle, Staritzbichler, René, Hernández, Guillermo Pérez, Rose, Alexander S, Tiemann, Johanna K S, Scheuermann, Gerik, Wiegreffe, Daniel, Hildebrand, Peter W

“…Abstract Molecular dynamics simulation is a proven technique for computing and visualizing the time-resolved motion of macromolecules at atomic resolution. The…”
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A Flexible Architecture for Web-based GIS Applications using Docker and Graph Databases by Annanias, Yves, Wiegreffe, Daniel

“…Regional planning processes and associated redevelopment projects can be complex due to the vast amount of diverse data involved. However, all of this data…”
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Big Data Competence Center ScaDS Dresden/Leipzig: Overview and selected research activities by Rahm, Erhard, Nagel, Wolfgang E., Peukert, Eric, Jäkel, René, Gärtner, Fabian, Stadler, Peter F., Wiegreffe, Daniel, Zeckzer, Dirk, Lehner, Wolfgang

“…Since its launch in October 2014, the Competence Center for Sca lable D ata Services and S olutions (ScaDS) Dresden/Leipzig carries out collaborative research…”
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An Interactive Decision Support System for Analyzing Time Related Restrictions in Renaturation and Redevelopment Planning Projects by Annanias, Yves, Meinecke, Christofer, Wiegreffe, Daniel

“…Workshop on Visualisation in Environmental Sciences (EnvirVis) 2023 The operation of open-cast lignite mines is a large intervention in nature, making the…”
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MDsrv -- visual sharing and analysis of molecular dynamics simulations by Kampfrath, Michelle, Staritzbichler, René, Hernández, Guillermo Pérez, Rose, Alexander S, Tiemann, Johanna K. S, Scheuermann, Gerik, Wiegreffe, Daniel, Hildebrand, Peter W

“…Molecular dynamics simulation is a proven technique for computing and visualizing the time-resolved motion of macromolecules at atomic resolution. The MDsrv is…”
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Supporting Land Reuse of Former Open Pit Mining Sites using Text Classification and Active Learning by Schröder, Christopher, Bürgl, Kim, Annanias, Yves, Niekler, Andreas, Müller, Lydia, Wiegreffe, Daniel, Bender, Christian, Mengs, Christoph, Scheuermann, Gerik, Heyer, Gerhard

“…Proceedings of the 59th Annual Meeting of the Association for Computational Linguistics and the 11th International Joint Conference on Natural Language…”
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Visualization in the Wild by Gillmann, Christina, Schmidt, Johanna, Wiegreffe, Daniel

“…Visualization approaches have been successfully applied to a variety of application fields. Continuously published novel visualization approaches reflect the…”
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Interactive Visualization in Applications by Gillmann, Christina, Schmidt, Johanna, Wiegreffe, Daniel

“…Interactive visualization empowers users to actively engage with data. This article introduces interactive visualization’s key features and its applications in…”
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An Interactive Decision Support System for Land Reuse Tasks by Annanias, Yves, Zeckzer, Dirk, Scheuermann, Gerik, Wiegreffe, Daniel

“…Experts face the task of deciding where and how land reuse-transforming previously used areas into landscape and utility areas-can be performed. This decision…”
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