Search Results - "Weytjens, Bram"

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  1. 1

    Network-Based Identification of Adaptive Pathways in Evolved Ethanol-Tolerant Bacterial Populations by Swings, Toon, Weytjens, Bram, Schalck, Thomas, Bonte, Camille, Verstraeten, Natalie, Michiels, Jan, Marchal, Kathleen

    Published in Molecular biology and evolution (01-11-2017)
    “…Efficient production of ethanol for use as a renewable fuel requires organisms with a high level of ethanol tolerance. However, this trait is complex and…”
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    Journal Article
  2. 2

    Image-Based Dynamic Phenotyping Reveals Genetic Determinants of Filamentation-Mediated β-Lactam Tolerance by Zahir, Taiyeb, Wilmaerts, Dorien, Franke, Sabine, Weytjens, Bram, Camacho, Rafael, Marchal, Kathleen, Hofkens, Johan, Fauvart, Maarten, Michiels, Jan

    Published in Frontiers in microbiology (13-03-2020)
    “…Antibiotic tolerance characterized by slow killing of bacteria in response to a drug can lead to treatment failure and promote the emergence of resistance…”
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    OMEN: network-based driver gene identification using mutual exclusivity by Van Daele, Dries, Weytjens, Bram, De Raedt, Luc, Marchal, Kathleen

    Published in Bioinformatics (13-06-2022)
    “…Abstract Motivation Network-based driver identification methods that can exploit mutual exclusivity typically fail to detect rare drivers because of their…”
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  6. 6

    SSA-ME Detection of cancer driver genes using mutual exclusivity by small subnetwork analysis by Pulido-Tamayo, Sergio, Weytjens, Bram, De Maeyer, Dries, Marchal, Kathleen

    Published in Scientific reports (03-11-2016)
    “…Because of its clonal evolution a tumor rarely contains multiple genomic alterations in the same pathway as disrupting the pathway by one gene often is…”
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  7. 7

    IAMBEE: a web-service for the identification of adaptive pathways from parallel evolved clonal populations by Perez-Romero, Camilo Andres, Weytjens, Bram, Decap, Dries, Swings, Toon, Michiels, Jan, De Maeyer, Dries, Marchal, Kathleen

    Published in Nucleic acids research (02-07-2019)
    “…IAMBEE is a web server designed for the Identification of Adaptive Mutations in Bacterial Evolution Experiments (IAMBEE). Input data consist of genotype…”
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  8. 8

    Network-Based Analysis of eQTL Data to Prioritize Driver Mutations by De Maeyer, Dries, Weytjens, Bram, De Raedt, Luc, Marchal, Kathleen

    Published in Genome biology and evolution (01-03-2016)
    “…In clonal systems, interpreting driver genes in terms of molecular networks helps understanding how these drivers elicit an adaptive phenotype. Obtaining such…”
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  9. 9

    PheNetic: network-based interpretation of molecular profiling data by De Maeyer, Dries, Weytjens, Bram, Renkens, Joris, De Raedt, Luc, Marchal, Kathleen

    Published in Nucleic acids research (01-07-2015)
    “…Molecular profiling experiments have become standard in current wet-lab practices. Classically, enrichment analysis has been used to identify biological…”
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  10. 10

    Molecular processes underlying synergistic linuron mineralization in a triple‐species bacterial consortium biofilm revealed by differential transcriptomics by Albers, Pieter, Weytjens, Bram, De Mot, René, Marchal, Kathleen, Springael, Dirk

    Published in MicrobiologyOpen (Weinheim) (01-04-2018)
    “…The proteobacteria Variovorax sp. WDL1, Comamonas testosteroni WDL7, and Hyphomicrobium sulfonivorans WDL6 compose a triple‐species consortium that…”
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