Search Results - "Weirather, Jason L"

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    Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis [version 2; peer review: 2 approved] by Weirather, Jason L, de Cesare, Mariateresa, Wang, Yunhao, Piazza, Paolo, Sebastiano, Vittorio, Wang, Xiu-Jie, Buck, David, Au, Kin Fai

    Published in F1000 research (2017)
    “…Background: Given the demonstrated utility of Third Generation Sequencing [Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT)] long reads in…”
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    Characterization of fusion genes and the significantly expressed fusion isoforms in breast cancer by hybrid sequencing by Weirather, Jason L, Afshar, Pegah Tootoonchi, Clark, Tyson A, Tseng, Elizabeth, Powers, Linda S, Underwood, Jason G, Zabner, Joseph, Korlach, Jonas, Wong, Wing Hung, Au, Kin Fai

    Published in Nucleic acids research (15-10-2015)
    “…We developed an innovative hybrid sequencing approach, IDP-fusion, to detect fusion genes, determine fusion sites and identify and quantify fusion isoforms…”
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    MAPS: pathologist-level cell type annotation from tissue images through machine learning by Shaban, Muhammad, Bai, Yunhao, Qiu, Huaying, Mao, Shulin, Yeung, Jason, Yeo, Yao Yu, Shanmugam, Vignesh, Chen, Han, Zhu, Bokai, Weirather, Jason L., Nolan, Garry P., Shipp, Margaret A., Rodig, Scott J., Jiang, Sizun, Mahmood, Faisal

    Published in Nature communications (02-01-2024)
    “…Highly multiplexed protein imaging is emerging as a potent technique for analyzing protein distribution within cells and tissues in their native context…”
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    The microenvironmental niche in classic Hodgkin lymphoma is enriched for CTLA-4–positive T cells that are PD-1–negative by Patel, Sanjay S., Weirather, Jason L., Lipschitz, Mikel, Lako, Ana, Chen, Pei-Hsuan, Griffin, Gabriel K., Armand, Philippe, Shipp, Margaret A., Rodig, Scott J.

    Published in Blood (05-12-2019)
    “…Classic Hodgkin lymphoma (cHL) is a tumor composed of rare, atypical, germinal center–derived B cells (Hodgkin Reed-Sternberg [HRS] cells) embedded within a…”
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    Integrated molecular drivers coordinate biological and clinical states in melanoma by Conway, Jake R., Dietlein, Felix, Taylor-Weiner, Amaro, AlDubayan, Saud, Vokes, Natalie, Keenan, Tanya, Reardon, Brendan, He, Meng Xiao, Margolis, Claire A., Weirather, Jason L., Haq, Rizwan, Schilling, Bastian, Stephen Hodi, F., Schadendorf, Dirk, Liu, David, Van Allen, Eliezer M.

    Published in Nature genetics (01-12-2020)
    “…We performed harmonized molecular and clinical analysis on 1,048 melanomas and discovered markedly different global genomic properties among subtypes ( BRAF ,…”
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    Study of parasite kinetics with antileishmanial drugs using real-time quantitative PCR in Indian visceral leishmaniasis by Sudarshan, Medhavi, Weirather, Jason L., Wilson, Mary E., Sundar, Shyam

    Published in Journal of antimicrobial chemotherapy (01-08-2011)
    “…Objectives This study describes parasite kinetics in the blood of visceral leishmaniasis patients treated with liposomal amphotericin B (L-AmB) or a preformed…”
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