Search Results - "Weik, Florian"

A coarse-grained DNA model for the prediction of current signals in DNA translocation experiments by Weik, Florian, Kesselheim, Stefan, Holm, Christian

“…We present an implicit solvent coarse-grained double-stranded DNA (dsDNA) model confined to an infinite cylindrical pore that reproduces the experimentally…”
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ESPResSo 4.0 – an extensible software package for simulating soft matter systems by Weik, Florian, Weeber, Rudolf, Szuttor, Kai, Breitsprecher, Konrad, de Graaf, Joost, Kuron, Michael, Landsgesell, Jonas, Menke, Henri, Sean, David, Holm, Christian

“…ESPResSo is an extensible simulation package for research on soft matter. This versatile molecular dynamics program was originally developed for coarse-grained…”
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Modeling the current modulation of dsDNA in nanopores – from mean-field to atomistic and back by Weik, Florian, Szuttor, Kai, Landsgesell, Jonas, Holm, Christian

“…All-atom molecular dynamics (MD) simulations of double stranded DNA (dsDNA) translocating through a cylindrical nanopore by Kesselheim et al. [Phys. Rev. Lett…”
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Accelerating the calculation of dipolar interactions in particle based simulations with open boundary conditions by means of the P2NFFT method by Weeber, Rudolf, Nestler, Franziska, Weik, Florian, Pippig, Michael, Potts, Daniel, Holm, Christian

“…Magnetic gels are soft elastic materials consisting of magnetic particles embedded in a polymer network. Their shape and elasticity can be controlled by an…”
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A thermalized electrokinetics model including stochastic reactions suitable for multiscale simulations of reaction–advection–diffusion systems by Tischler, Ingo, Weik, Florian, Kaufmann, Robert, Kuron, Michael, Weeber, Rudolf, Holm, Christian

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Modeling the Current Modulation of Bundled DNA Structures in Nanopores by Szuttor, Kai, Weik, Florian, Grad, Jean-Noël, Holm, Christian

“…We investigate the salt-dependent current modulation of bundled DNA nanostructures in a nanopore. To this end, we developed four simulation models for a 2x2…”
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Lees-Edwards boundary conditions for translation invariant shear flow: implementation and transport properties by Bindgen, Sebastian, Weik, Florian, Weeber, Rudolf, Koos, Erin, de Buyl, Pierre

“…Physics of Fluids 33(8), 083615 (2021) Molecular dynamics (MD) simulations represent a powerful investigation tool in the field of soft matter. By using shear…”
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Accelerating the calculation of dipolar interactions in particle based simulations with open boundary conditions by means of the P2NFFT method by Weeber, Rudolf, Nestler, Franziska, Weik, Florian, Pippig, Michael, Potts, Daniel, Holm, Christian

“…Magnetic gels are soft elastic materials consisting of magnetic particles embedded in a polymer network. Their shape and elasticity can be controlled by an…”
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Accommodating Thread-Level Heterogeneity in Coupled Parallel Applications by Gutierrez, Samuel K., Davis, Kei, Arnold, Dorian C., Baker, Randal S., Robey, Robert W., McCormick, Patrick, Holladay, Daniel, Dahl, Jon A., Zerr, R. Joe, Weik, Florian, Junghans, Christoph

“…Hybrid parallel program models that combine message passing and multithreading (MP+MT) are becoming more popular, extending the basic message passing (MP)…”
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ESPResSo 4.0 -- An Extensible Software Package for Simulating Soft Matter Systems by Weik, Florian, Weeber, Rudolf, Szuttor, Kai, Breitsprecher, Konrad, de Graaf, Joost, Kuron, Michael, Landsgesell, Jonas, Menke, Henri, Sean, David, Holm, Christian

“…ESPResSo 4.0 is an extensible simulation package for research on soft matter. This versatile molecular dynamics program was originally developed for…”
Get full text