Search Results - "Weber, Leon"

Deep learning with word embeddings improves biomedical named entity recognition by Habibi, Maryam, Weber, Leon, Neves, Mariana, Wiegandt, David Luis, Leser, Ulf

“…Text mining has become an important tool for biomedical research. The most fundamental text-mining task is the recognition of biomedical named entities (NER),…”
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HunFlair: an easy-to-use tool for state-of-the-art biomedical named entity recognition by Weber, Leon, Sänger, Mario, Münchmeyer, Jannes, Habibi, Maryam, Leser, Ulf, Akbik, Alan

“…Abstract Summary Named entity recognition (NER) is an important step in biomedical information extraction pipelines. Tools for NER should be easy to use, cover…”
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HUNER: improving biomedical NER with pretraining by Weber, Leon, Münchmeyer, Jannes, Rocktäschel, Tim, Habibi, Maryam, Leser, Ulf

“…Abstract Motivation Several recent studies showed that the application of deep neural networks advanced the state-of-the-art in named entity recognition (NER),…”
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Graph Neural Networks for Learning Molecular Excitation Spectra by Singh, Kanishka, Münchmeyer, Jannes, Weber, Leon, Leser, Ulf, Bande, Annika

“…Machine learning (ML) approaches have demonstrated the ability to predict molecular spectra at a fraction of the computational cost of traditional theoretical…”
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PEDL+: protein-centered relation extraction from PubMed at your fingertip by Weber, Leon, Barth, Fabio, Lorenz, Leonie, Konrath, Fabian, Huska, Kirsten, Wolf, Jana, Leser, Ulf

“…Relation extraction (RE) from large text collections is an important tool for database curation, pathway reconstruction, or functional omics data analysis. In…”
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PEDL: extracting protein–protein associations using deep language models and distant supervision by Weber, Leon, Thobe, Kirsten, Migueles Lozano, Oscar Arturo, Wolf, Jana, Leser, Ulf

“…Abstract Motivation A significant portion of molecular biology investigates signalling pathways and thus depends on an up-to-date and complete resource of…”
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Chemical-protein relation extraction with ensembles of carefully tuned pretrained language models by Weber, Leon, Sänger, Mario, Garda, Samuele, Barth, Fabio, Alt, Christoph, Leser, Ulf

“…The identification of chemical-protein interactions described in the literature is an important task with applications in drug design, precision medicine and…”
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ActiveAED: A Human in the Loop Improves Annotation Error Detection by Weber, Leon, Plank, Barbara

“…Manually annotated datasets are crucial for training and evaluating Natural Language Processing models. However, recent work has discovered that even…”
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BELB: a biomedical entity linking benchmark by Garda, Samuele, Weber-Genzel, Leon, Martin, Robert, Leser, Ulf

“…Abstract Motivation Biomedical entity linking (BEL) is the task of grounding entity mentions to a knowledge base (KB). It plays a vital role in information…”
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HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools by Sänger, Mario, Garda, Samuele, Wang, Xing David, Weber-Genzel, Leon, Droop, Pia, Fuchs, Benedikt, Akbik, Alan, Leser, Ulf

“…Abstract Motivation With the exponential growth of the life sciences literature, biomedical text mining (BTM) has become an essential technology for…”
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Establishing Trustworthiness: Rethinking Tasks and Model Evaluation by Litschko, Robert, Müller-Eberstein, Max, van der Goot, Rob, Weber, Leon, Plank, Barbara

“…Language understanding is a multi-faceted cognitive capability, which the Natural Language Processing (NLP) community has striven to model computationally for…”
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Segmentation of Radar-Recorded Heart Sound Signals Using Bidirectional LSTM Networks by Shi, Kilin, Weigel, Robert, Koelpin, Alexander, Schellenberger, Sven, Weber, Leon, Wiedemann, Jan Philipp, Michler, Fabian, Steigleder, Tobias, Malessa, Anke, Lurz, Fabian, Ostgathe, Christoph

“…Sounds caused by the action of the heart reflect both its health as well as deficiencies and are examined by physicians since antiquity. Pathologies of the…”
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NLProlog: Reasoning with Weak Unification for Question Answering in Natural Language by Weber, Leon, Minervini, Pasquale, Münchmeyer, Jannes, Leser, Ulf, Rocktäschel, Tim

“…Rule-based models are attractive for various tasks because they inherently lead to interpretable and explainable decisions and can easily incorporate prior…”
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HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition by Weber, Leon, Sänger, Mario, Münchmeyer, Jannes, Habibi, Maryam, Leser, Ulf, Akbik, Alan

“…Named Entity Recognition (NER) is an important step in biomedical information extraction pipelines. Tools for NER should be easy to use, cover multiple entity…”
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Text Mining for Pathway Curation by Weber-Genzel, Leon

“…Biolog:innen untersuchen häufig Pathways, Netzwerke von Interaktionen zwischen Proteinen und Genen mit einer spezifischen Funktion. Neue Erkenntnisse über…”
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BigBIO: A Framework for Data-Centric Biomedical Natural Language Processing by Fries, Jason Alan, Weber, Leon, Seelam, Natasha, Altay, Gabriel, Datta, Debajyoti, Garda, Samuele, Kang, Myungsun, Su, Ruisi, Kusa, Wojciech, Cahyawijaya, Samuel, Barth, Fabio, Ott, Simon, Samwald, Matthias, Bach, Stephen, Biderman, Stella, Sänger, Mario, Wang, Bo, Callahan, Alison, Periñán, Daniel León, Gigant, Théo, Haller, Patrick, Chim, Jenny, Posada, Jose David, Giorgi, John Michael, Sivaraman, Karthik Rangasai, Pàmies, Marc, Nezhurina, Marianna, Martin, Robert, Cullan, Michael, Freidank, Moritz, Dahlberg, Nathan, Mishra, Shubhanshu, Bose, Shamik, Broad, Nicholas Michio, Labrak, Yanis, Deshmukh, Shlok S, Kiblawi, Sid, Singh, Ayush, Vu, Minh Chien, Neeraj, Trishala, Golde, Jonas, del Moral, Albert Villanova, Beilharz, Benjamin

“…Training and evaluating language models increasingly requires the construction of meta-datasets --diverse collections of curated data with clear provenance…”
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The BigScience ROOTS Corpus: A 1.6TB Composite Multilingual Dataset by Laurençon, Hugo, Saulnier, Lucile, Wang, Thomas, Akiki, Christopher, del Moral, Albert Villanova, Scao, Teven Le, Von Werra, Leandro, Mou, Chenghao, Ponferrada, Eduardo González, Nguyen, Huu, Frohberg, Jörg, Šaško, Mario, Lhoest, Quentin, McMillan-Major, Angelina, Dupont, Gerard, Biderman, Stella, Rogers, Anna, allal, Loubna Ben, De Toni, Francesco, Pistilli, Giada, Nguyen, Olivier, Nikpoor, Somaieh, Masoud, Maraim, Colombo, Pierre, de la Rosa, Javier, Villegas, Paulo, Thrush, Tristan, Longpre, Shayne, Nagel, Sebastian, Weber, Leon, Muñoz, Manuel, Zhu, Jian, Van Strien, Daniel, Alyafeai, Zaid, Almubarak, Khalid, Vu, Minh Chien, Gonzalez-Dios, Itziar, Soroa, Aitor, Lo, Kyle, Dey, Manan, Suarez, Pedro Ortiz, Gokaslan, Aaron, Bose, Shamik, Adelani, David, Phan, Long, Tran, Hieu, Yu, Ian, Pai, Suhas, Chim, Jenny, Lepercq, Violette, Ilic, Suzana, Mitchell, Margaret, Luccioni, Sasha Alexandra, Jernite, Yacine

“…As language models grow ever larger, the need for large-scale high-quality text datasets has never been more pressing, especially in multilingual settings. The…”
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Donkii: Can Annotation Error Detection Methods Find Errors in Instruction-Tuning Datasets? by Weber-Genzel, Leon, Litschko, Robert, Artemova, Ekaterina, Plank, Barbara

“…Instruction tuning has become an integral part of training pipelines for Large Language Models (LLMs) and has been shown to yield strong performance gains. In…”
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BELB: a Biomedical Entity Linking Benchmark by Garda, Samuele, Weber-Genzel, Leon, Martin, Robert, Leser, Ulf

“…Biomedical entity linking (BEL) is the task of grounding entity mentions to a knowledge base. It plays a vital role in information extraction pipelines for the…”
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VariErr NLI: Separating Annotation Error from Human Label Variation by Weber-Genzel, Leon, Peng, Siyao, de Marneffe, Marie-Catherine, Plank, Barbara

“…Human label variation arises when annotators assign different labels to the same item for valid reasons, while annotation errors occur when labels are assigned…”
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