Search Results - "Wang, J.T.L."

Discovering Frequent Agreement Subtrees from Phylogenetic Data by Zhang, S., Wang, j.T.L.

“…We study a new data mining problem concerning the discovery of frequent agreement subtrees (FASTs) from a set of phylogenetic trees. A phylogenetic tree, or…”
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Finding patterns in three-dimensional graphs: algorithms and applications to scientific data mining by Xiong Wang, Wang, J.T.L., Shasha, D., Shapiro, B.A., Rigoutsos, I., Kaizhong Zhang

“…Presents a method for finding patterns in 3D graphs. Each node in a graph is an undecomposable or atomic unit and has a label. Edges are links between the…”
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MetricMap: an embedding technique for processing distance-based queries in metric spaces by Wang, J.T.L., Xiong Wang, Shasha, D., Kaizhong Zhang

“…In this paper, we present an embedding technique, called MetricMap, which is capable of estimating distances in a pseudometric space. Given a database of…”
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DNA sequence classification via an expectation maximization algorithm and neural networks: a case study by Qicheng Ma, Wang, J.T.L., Shasha, D., Wu, C.H.

“…Presents new techniques for biosequence classification, with a focus on recognizing E. Coli promoters in DNA. Specifically, given an unlabeled DNA sequence S,…”
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An algorithm for finding the largest approximately common substructures of two trees by Wang, J.T.L., Shapiro, B.A., Shasha, D., Zhang, K., Currey, K.M.

“…Ordered, labeled trees are trees in which each node has a label and the left-to-right order of its children (if it has any) is fixed. Such trees have many…”
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Unordered tree mining with applications to phylogeny by Shasha, D., Wang, J.T.L., Sen Zhang

“…Frequent structure mining (FSM) aims to discover and extract patterns frequently occurring in structural data, such as trees and graphs. FSM finds many…”
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PhyloMiner: A Tool for Evolutionary Data Analysis by Zhang, S., Herbert, K.G., Wang, J.T.L., Piel, W.H., Stockwell, D.R.B.

“…Currently, phylogenetic tree techniques are being used in multiple areas, from tree of life problems to pathogen recognition to drug discovery. With all of…”
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Discovering active motifs in sets of related protein sequences and using them for classification by Wang, J.T.L, Marr, T.G, Shasha, D, Shapiro, B.A, Chirn, G.W

“…We describe a method for discovering active motifs in a set of related protein sequences. The method is an automatic two step process: (1) find candidate…”
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LHM: a logic-based hypertext data model for integrating hypertext and information systems by Jiangling Wan, Bieber, M., Wang, J.T.L., Ng, P.A.

“…The work employs logic modeling as a common language to integrate two independent information domains-document management and hypertext. The paper extends the…”
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The approximate graph matching problem by Wang, J.T.L., Kaizhong Zhang, Gung-Wei Chirn

“…Labeled graphs are graphs in which each node and edge has a label. The distance between two labeled graphs is considered to be the weighted sum of the costs of…”
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Fast similarity search in databases of 3D objects by Xiong Wang, Wang, J.T.L.

“…Given a database D of three dimensional (3D) objects and a target object Q, the similarity search problem (also known as good-match retrieval) is defined as…”
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RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research by Khaladkar, M., Bellofatto, V., Wang, J.T.L., Tian, B., Zhang, K.

“…In this paper we present RADAR, a web-based toolkit for RNA data analysis and research. The toolkit is capable of performing database search, multiple…”
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ATreeGrep: approximate searching in unordered trees by Shasha, D., Wang, J.T.L., Huiyuan Shan, Kaizhong Zhang

“…An unordered labeled tree is a tree in which each node has a string label and the parent-child relationship is significant, but the order among siblings is…”
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XML clustering by principal component analysis by Jianghui Liu, Wang, J.T.L., Hsu, W., Herbert, K.G.

“…XML is increasingly important in data exchange and information management. A large amount of efforts have been spent in developing efficient techniques for…”
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TreeRank: a similarity measure for nearest neighbor searching in phylogenetic databases by Wang, J.T.L., Huiyuan Shan, Shasha, D., Piel, W.H.

“…Phylogenetic trees are unordered labeled trees in which each leaf node has a label and the order among siblings is unimportant. In this paper we propose a new…”
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Application of hidden Markov models to gene prediction in DNA by Yin, M.M., Wang, J.T.L.

“…Programs currently available for gene prediction from within genomic DNA are far from being powerful enough to elucidate the gene structure completely. We…”
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A New Kernel Method for RNA Classification by Xiaoming Wu, Wang, J.T.L., Herbert, K.G.

“…Support vector machines (SVMs) are a state-of-the-art machine learning tool widely used in speech recognition, image processing and biological sequence…”
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Nested segmentation: an approach for layout analysis in document classification by Hao, X., Wang, J.T.L., Ng, P.A.

“…Office information systems (OISs) are employed to support office workers in their management of information and to assist them in their daily work. In the…”
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Constrained RNA Structural Alignment: Algorithms and Application to Motif Detection in the Untranslated Regions of Trypanosoma brucei mRNAs by Khaladkar, M., Bellofatto, V., Wang, J.T.L., Patel, V., Nakayama, M.K.

“…In this paper we propose a new method for aligning two RNA secondary structures by taking into account the presence of conserved RNA substructures, or…”
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Mining genes in DNA using GeneScout by Yin, M.M., Wang, J.T.L.

“…In this paper we present a new system, called GeneScout, for predicting gene structures in vertebrate genomic DNA. The system contains specially designed…”
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