Search Results - "Walston Davenport, Karen"

Complete Genome Sequence of the Cellulolytic Thermophile Clostridium thermocellum DSM1313 by FEINBERG, Lawrence, FODEN, Justine, CHENG, Jan-Fang, PITLUCK, Samuel, WOYKE, Tanja, IVANOVA, Natalia, MIKHAILOVA, Natalia, LAND, Miriam, HAUSER, Loren, AARON ARGYROS, D, GOODWIN, Lynne, HOGSETT, David, BARRETT, Trisha, CAIAZZA, Nicky, WALSTON DAVENPORT, Karen, BRUCE, David, DETTER, Chris, TAPIA, Roxanne, HAN, Cliff, LAPIDUS, Alia, LUCAS, Susan

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Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T by Elkins, James G, Lochner, Adriane, Hamilton-Brehm, Scott D, Davenport, Karen Walston, Podar, Mircea, Brown, Steven D, Land, Miriam L, Hauser, Loren J, Klingeman, Dawn M, Raman, Babu, Goodwin, Lynne A, Tapia, Roxanne, Meincke, Linda J, Detter, J Chris, Bruce, David C, Han, Cliff S, Palumbo, Anthony V, Cottingham, Robert W, Keller, Martin, Graham, David E

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Genome Sequence of Victivallis vadensis ATCC BAA-548, an Anaerobic Bacterium from the Phylum Lentisphaerae, Isolated from the Human Gastrointestinal Tract by VAN PASSEL, Mark W. J, KANT, Ravi, GOODWIN, Lynne, PITLUCK, Sam, WALSTON DAVENPORT, Karen, SIMS, David, BRETTIN, Thomas S, DETTER, John C, SHUNSHENG HAN, LARIMER, Frank W, LAND, Miriam L, HAUSER, Loren, PALVA, Airi, KYRPIDES, Nikolaos, OVCHINNIKOVA, Galina, RICHARDSON, P. Paul, DE VOS, Willem M, SMIDT, Hauke, ZOETENDAL, Erwin G, LUCAS, Susan, COPELAND, Alex, LAPIDUS, Alia, DEL RIO, Tijana Glavina, DALIN, Eileen, TICE, Hope, BRUCE, David

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Complete Genome Sequences of Krokinobactersp. Strain 4H-3-7-5 and Lacinutrixsp. Strain 5H-3-7-4, Polysaccharide-Degrading Members of the Family Flavobacteriaceae by Klippel, Barbara, Lochner, Adriane, Bruce, David C., Walston Davenport, Karen, Detter, Chris, Goodwin, Lynne A., Han, James, Han, Shunsheng, Hauser, Loren, Land, Miriam L., Nolan, Matt, Ovchinnikova, Galina, Pennacchio, Len, Pitluck, Sam, Tapia, Roxanne, Woyke, Tanja, Wiebusch, Sigrid, Basner, Alexander, Abe, Fumiyoshi, Horikoshi, Koki, Keller, Martin, Antranikian, Garabed

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Complete Genome Sequence of the Marine Cellulose- and Xylan-Degrading Bacterium Glaciecolasp. Strain 4H-3-7+YE-5 by Klippel, Barbara, Lochner, Adriane, Bruce, David C., Walston Davenport, Karen, Detter, Chris, Goodwin, Lynne A., Han, James, Han, Shunsheng, Land, Miriam L., Mikhailova, Natalia, Nolan, Matt, Pennacchio, Len, Pitluck, Sam, Tapia, Roxanne, Woyke, Tanja, Wiebusch, Sigrid, Basner, Alexander, Abe, Fumiyoshi, Horikoshi, Koki, Keller, Martin, Antranikian, Garabed

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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus by BLUMER-SCHUETTE, Sara E, OZDEMIR, Inci, WOYKE, Tanja, MIKHAILOVA, Natalia, PATI, Amrita, KYRPIDES, Nikos C, IVANOVA, Natalia, DETTER, John C, WALSTON-DAVENPORT, Karen, SHUNSHENG HAN, ADAMS, Michael W. W, KELLY, Robert M, MISTRY, Dhaval, LUCAS, Susan, LAPIDUS, Alla, CHENG, Jan-Fang, GOODWIN, Lynne A, PITLUCK, Samuel, LAND, Miriam L, HAUSER, Loren J

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Draft genome sequence of Frankia sp. strain CN3, an atypical, noninfective (Nod-) ineffective (Fix-) isolate from Coriaria nepalensis by Ghodhbane-Gtari, Faten, Beauchemin, Nicholas, Bruce, David, Chain, Patrick, Chen, Amy, Walston Davenport, Karen, Deshpande, Shweta, Detter, Chris, Furnholm, Teal, Goodwin, Lynne, Gtari, Maher, Han, Cliff, Han, James, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Land, Miriam L, Markowitz, Victor, Mavrommatis, Kostas, Nolan, Matt, Nouioui, Imen, Pagani, Ioanna, Pati, Amrita, Pitluck, Sam, Santos, Catarina L, Sen, Arnab, Sur, Saubashya, Szeto, Ernest, Tavares, Fernando, Teshima, Hazuki, Thakur, Subarna, Wall, Luis, Woyke, Tanja, Tisa, Louis S

“…We report here the genome sequence of Frankia sp. strain CN3, which was isolated from Coriaria nepalensis. This genome sequence is the first from the fourth…”
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Draft genome sequence of Frankia sp. strain QA3, a nitrogen-fixing actinobacterium isolated from the root nodule of Alnus nitida by Sen, Arnab, Beauchemin, Nicholas, Bruce, David, Chain, Patrick, Chen, Amy, Walston Davenport, Karen, Deshpande, Shweta, Detter, Chris, Furnholm, Teal, Ghodbhane-Gtari, Faten, Goodwin, Lynne, Gtari, Maher, Han, Cliff, Han, James, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos, Land, Miriam L, Markowitz, Victor, Mavrommatis, Kostas, Nolan, Matt, Nouioui, Imen, Pagani, Ioanna, Pati, Amrita, Pitluck, Sam, Santos, Catarina L, Sur, Saubashya, Szeto, Ernest, Tavares, Fernando, Teshima, Hazuki, Thakur, Subarna, Wall, Luis, Woyke, Tanja, Wishart, Jessie, Tisa, Louis S

“…Members of the actinomycete genus Frankia form a nitrogen-fixing symbiosis with 8 different families of actinorhizal plants. We report a high-quality draft…”
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens by Aylward, Frank O, Tremmel, Daniel M, Bruce, David C, Chain, Patrick, Chen, Amy, Walston Davenport, Karen, Detter, Chris, Han, Cliff S, Han, James, Huntemann, Marcel, Ivanova, Natalia N, Kyrpides, Nikos C, Markowitz, Victor, Mavrommatis, Kostas, Nolan, Matt, Pagani, Ioanna, Pati, Amrita, Pitluck, Sam, Deshpande, Shweta, Goodwin, Lynne, Woyke, Tanja, Currie, Cameron R

“…The bacterium strain FGI 57 was isolated from a fungus garden of the leaf-cutter ant . Analysis of its single 4.76-Mbp chromosome will shed light on community…”
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Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life by Shakya, Migun, Ahmed, Sanaa A., Davenport, Karen W., Flynn, Mark C., Lo, Chien-Chi, Chain, Patrick S. G.

“…There is growing interest in reconstructing phylogenies from the copious amounts of genome sequencing projects that target related viral, bacterial or…”
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Microbial Diversity in Bushmeat Samples Recovered from the Serengeti Ecosystem in Tanzania by Katani, Robab, Schilling, Megan A., Lyimo, Beatus, Tonui, Triza, Cattadori, Isabella M., Eblate, Ernest, Martin, Andimile, Estes, Anna B., Buza, Teresia, Rentsch, Dennis, Davenport, Karen W., Hovde, Blake T., Lyimo, Samson, Munuo, Lydia, Stomeo, Francesca, Tiambo, Christian, Radzio-Basu, Jessica, Mosha, Fausta, Hudson, Peter J., Buza, Joram J., Kapur, Vivek

“…Bushmeat, the meat and organs derived from wildlife species, is a common source of animal protein in the diets of those living in sub-Saharan Africa and is…”
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Complete genome sequence of “Enterobacter lignolyticus” SCF1 by DeAngelis, Kristen M., D’Haeseleer, Patrik, Chivian, Dylan, Fortney, Julian L., Khudyakov, Jane, Simmons, Blake, Woo, Hannah, Arkin, Adam P., Davenport, Karen Walston, Goodwin, Lynne, Chen, Amy, Ivanova, Natalia, Kyrpides, Nikos C., Mavromatis, Konstantinos, Woyke, Tanja, Hazen, Terry C.

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Bioinformatic and Mechanistic Analysis of the Palmerolide PKS-NRPS Biosynthetic Pathway From the Microbiome of an Antarctic Ascidian by Avalon, Nicole E, Murray, Alison E, Daligault, Hajnalka E, Lo, Chien-Chi, Davenport, Karen W, Dichosa, Armand E K, Chain, Patrick S G, Baker, Bill J

“…Complex interactions exist between microbiomes and their hosts. Increasingly, defensive metabolites that have been attributed to host biosynthetic capability…”
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Complete Genome Sequence of a Parabacteroides distasonis Strain (CavFT hAR46) Isolated from a Gut Wall-Cavitating Microlesion in a Patient with Severe Crohn's Disease by Yang, Falong, Kumar, Anand, Davenport, Karen Walston, Kelliher, Julia Mae, Ezeji, Jessica C, Good, Caryn E, Jacobs, Michael R, Conger, Mathew, West, Gail, Fiocchi, Claudio, Cominelli, Fabio, Dichosa, Armand Earl Ko, Rodriguez-Palacios, Alexander

“…Crohn's disease (CD) is a chronic inflammatory bowel disease (IBD) of the digestive tract in humans. There is evidence that could contribute to IBD. Here, we…”
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Complete Genome Sequences of Historic Clostridioides difficile Food-Dwelling Ribotype 078 Strains in Canada Identical to That of the Historic Human Clinical Strain M120 in the United Kingdom by Kumar, Anand, Davenport, Karen Walston, Vuyisich, Grace, Kunde, Yuliya A, Johnson, Shannon Lyn, Chain, Patrick Sam Guy, Dichosa, Armand Earl Ko, Rodriguez-Palacios, Alex

“…Clostridioides (Clostridium) difficile is a spore-forming anaerobic bacterium that causes severe intestinal diseases in humans. Here, we report the complete…”
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Complete Genome Sequence of the Marine Cellulose- and Xylan-Degrading Bacterium Glaciecola sp. Strain 4H-3-7+YE-5 by KLIPPEL, Barbara, LOCHNER, Adriane, NOLAN, Matt, PENNACCHIO, Len, PITLUCK, Sam, TAPIA, Roxanne, WOYKE, Tanja, WIEBUSCH, Sigrid, BASNER, Alexander, ABE, Fumiyoshi, HORIKOSHI, Koki, KELLER, Martin, BRUCE, David C, ANTRANIKIAN, Garabed, DAVENPORT, Karen Walston, DETTER, Chris, GOODWIN, Lynne A, HAN, James, SHUNSHENG HAN, LAND, Miriam L, MIKHAILOVA, Natalia

“…Glaciecola sp. strain 4H-3-7+YE-5 was isolated from subseafloor sediments at Suruga Bay in Japan and is capable of efficiently hydrolyzing cellulose and xylan…”
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Discovery of an Antarctic Ascidian-Associated Uncultivated Verrucomicrobia with Antimelanoma Palmerolide Biosynthetic Potential by Murray, Alison E, Lo, Chien-Chi, Daligault, Hajnalka E, Avalon, Nicole E, Read, Robert W, Davenport, Karen W, Higham, Mary L, Kunde, Yuliya, Dichosa, Armand E K, Baker, Bill J, Chain, Patrick S G

“…The Antarctic marine ecosystem harbors a wealth of biological and chemical innovation that has risen in concert over millennia since the isolation of the…”
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Comparing variability in diagnosis of upper respiratory tract infections in patients using syndromic, next generation sequencing, and PCR-based methods by Bartlow, Andrew W, Stromberg, Zachary R, Gleasner, Cheryl D, Hu, Bin, Davenport, Karen W, Jakhar, Shailja, Li, Po-E, Vosburg, Molly, Garimella, Madhavi, Chain, Patrick S G, Erkkila, Tracy H, Fair, Jeanne M, Mukundan, Harshini

“…Early and accurate diagnosis of respiratory pathogens and associated outbreaks can allow for the control of spread, epidemiological modeling, targeted…”
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Complete genome sequences of Krokinobacter sp. strain 4H-3-7-5 and Lacinutrix sp. strain 5H-3-7-4, polysaccharide-degrading members of the family Flavobacteriaceae by Klippel, Barbara, Lochner, Adriane, Bruce, David C, Davenport, Karen Walston, Detter, Chris, Goodwin, Lynne A, Han, James, Han, Shunsheng, Hauser, Loren, Land, Miriam L, Nolan, Matt, Ovchinnikova, Galina, Pennacchio, Len, Pitluck, Sam, Tapia, Roxanne, Woyke, Tanja, Wiebusch, Sigrid, Basner, Alexander, Abe, Fumiyoshi, Horikoshi, Koki, Keller, Martin, Antranikian, Garabed

“…Two members of the family Flavobacteriaceae were isolated from subseafloor sediments using artificial seawater with cellulose, xylan, and chitin as the sole…”
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Complete Genome Assemblies for Two Single-Chromosome Vibrio cholerae Isolates, Strains 1154-74 (Serogroup O49) and 10432-62 (Serogroup O27) by Johnson, S L, Khiani, A, Bishop-Lilly, K A, Chapman, C, Patel, M, Verratti, K, Teshima, H, Munk, A C, Bruce, D C, Han, C S, Xie, G, Davenport, K W, Chain, P, Sozhamannan, S

“…Here, we report the completed genome sequences for two non-O1/non-O139 Vibrio cholerae isolates. Each isolate has only a single chromosome, as opposed to the…”
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