Search Results - "Walsh, Sean"

Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material by Walsh, P S, Metzger, D A, Higuchi, R

“…Procedures utilizing Chelex 100 chelating resin have been developed for extracting DNA from forensic-type samples for use with the PCR. The procedures are…”
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U-Net: deep learning for cell counting, detection, and morphometry by Falk, Thorsten, Mai, Dominic, Bensch, Robert, Çiçek, Özgün, Abdulkadir, Ahmed, Marrakchi, Yassine, Böhm, Anton, Deubner, Jan, Jäckel, Zoe, Seiwald, Katharina, Dovzhenko, Alexander, Tietz, Olaf, Dal Bosco, Cristina, Walsh, Sean, Saltukoglu, Deniz, Tay, Tuan Leng, Prinz, Marco, Palme, Klaus, Simons, Matias, Diester, Ilka, Brox, Thomas, Ronneberger, Olaf

“…U-Net is a generic deep-learning solution for frequently occurring quantification tasks such as cell detection and shape measurements in biomedical image data…”
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Federated learning for multi-center imaging diagnostics: a simulation study in cardiovascular disease by Linardos, Akis, Kushibar, Kaisar, Walsh, Sean, Gkontra, Polyxeni, Lekadir, Karim

“…Deep learning models can enable accurate and efficient disease diagnosis, but have thus far been hampered by the data scarcity present in the medical world…”
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Performance of a Genomic Sequencing Classifier for the Preoperative Diagnosis of Cytologically Indeterminate Thyroid Nodules by Patel, Kepal N, Angell, Trevor E, Babiarz, Joshua, Barth, Neil M, Blevins, Thomas, Duh, Quan-Yang, Ghossein, Ronald A, Harrell, R Mack, Huang, Jing, Kennedy, Giulia C, Kim, Su Yeon, Kloos, Richard T, LiVolsi, Virginia A, Randolph, Gregory W, Sadow, Peter M, Shanik, Michael H, Sosa, Julie A, Traweek, S Thomas, Walsh, P Sean, Whitney, Duncan, Yeh, Michael W, Ladenson, Paul W

“…Use of next-generation sequencing of RNA and machine learning algorithms can classify the risk of malignancy in cytologically indeterminate thyroid nodules to…”
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Preoperative Diagnosis of Benign Thyroid Nodules with Indeterminate Cytology by Alexander, Erik K, Kennedy, Giulia C, Baloch, Zubair W, Cibas, Edmund S, Chudova, Darya, Diggans, James, Friedman, Lyssa, Kloos, Richard T, LiVolsi, Virginia A, Mandel, Susan J, Raab, Stephen S, Rosai, Juan, Steward, David L, Walsh, P. Sean, Wilde, Jonathan I, Zeiger, Martha A, Lanman, Richard B, Haugen, Bryan R

“…A significant fraction of fine-needle aspirates obtained from thyroid nodules are read as indeterminate. A new molecular test accurately predicts whether a…”
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Radiomics: the bridge between medical imaging and personalized medicine by Lambin, Philippe, Leijenaar, Ralph T.H., Deist, Timo M., Peerlings, Jurgen, de Jong, Evelyn E.C., van Timmeren, Janita, Sanduleanu, Sebastian, Larue, Ruben T.H.M., Even, Aniek J.G., Jochems, Arthur, van Wijk, Yvonka, Woodruff, Henry, van Soest, Johan, Lustberg, Tim, Roelofs, Erik, van Elmpt, Wouter, Dekker, Andre, Mottaghy, Felix M., Wildberger, Joachim E., Walsh, Sean

“…Key Points Radiomics is becoming increasingly more important in medical imaging The explosion of medical imaging data creates an environment ideal for…”
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Utility of a Molecular Classifier as a Complement to High-Resolution Computed Tomography to Identify Usual Interstitial Pneumonia by Richeldi, Luca, Scholand, Mary Beth, Lynch, David A, Colby, Thomas V, Myers, Jeffrey L, Groshong, Steve D, Chung, Jonathan H, Benzaquen, Sadia, Nathan, Steven D, Davis, J Russell, Schmidt, Shelley L, Hagmeyer, Lars, Sonetti, David, Hetzel, Jurgen, Criner, Gerard J, Case, Amy H, Ramaswamy, Murali, Calero, Karel, Gauhar, Umair A, Patel, Nina M, Lancaster, Lisa, Choi, Yoonha, Pankratz, Daniel G, Walsh, P Sean, Lofaro, Lori R, Huang, Jing, Bhorade, Sangeeta M, Kennedy, Giulia C, Martinez, Fernando J, Raghu, Ganesh

“…Usual interstitial pneumonia (UIP) is the defining morphology of idiopathic pulmonary fibrosis (IPF). Guidelines for IPF diagnosis conditionally recommend…”
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A Nasal Swab Classifier to Evaluate the Probability of Lung Cancer in Patients With Pulmonary Nodules by Lamb, Carla R., Rieger-Christ, Kimberly M., Reddy, Chakravarthy, Huang, Jing, Ding, Jie, Johnson, Marla, Walsh, P. Sean, Bulman, William A., Lofaro, Lori R., Wahidi, Momen M., Feller-Kopman, David J., Spira, Avrum, Kennedy, Giulia C., Mazzone, Peter J.

“…Accurate assessment of the probability of lung cancer (pCA) is critical in patients with pulmonary nodules (PNs) to help guide decision-making. We sought to…”
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A Randomized Trial of Single-Dose Oral Dexamethasone Versus Multidose Prednisolone for Acute Exacerbations of Asthma in Children Who Attend the Emergency Department by Cronin, John J., MB, AFRCSI, McCoy, Siobhan, RGN, RCN, Kennedy, Una, FRCEM, an Fhailí, Sinéad Nic, PhD, MICR, Wakai, Abel, MD, FRCEM, Hayden, John, BPharm, Crispino, Gloria, PhD, CStat, Barrett, Michael J., MB, MRCPI, Walsh, Sean, FRCEM, O’Sullivan, Ronan, FPAEDS, MBA

“…Study objective In acute exacerbations of asthma in children, corticosteroids reduce relapses, subsequent hospital admission, and the need for ß2 -agonist…”
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Blockchain for Privacy Preserving and Trustworthy Distributed Machine Learning in multicentric Medical Imaging (C-DistriM) by Zerka, Fadila, Urovi, Visara, Vaidyanathan, Akshayaa, Barakat, Samir, Leijenaar, Ralph T.H., Walsh, Sean, Gabrani-Juma, Hanif, Miraglio, Benjamin, Woodruff, Henry C., Dumontier, Michel, Lambin, Philippe

“…The utility of Artificial Intelligence (AI) in healthcare strongly depends upon the quality of the data used to build models, and the confidence in the…”
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The Anti-Viral Activity of Prunella vulgaris : A Narrative Review by Mak, William Chi Keung, Walsh, Sean

“…Introduction: This narrative review reports on the anti-viral activity of Prunella vulgaris with the aim of providing an overview of P. vulgaris research to…”
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Systems‐based analysis of Arabidopsis leaf growth reveals adaptation to water deficit by Baerenfaller, Katja, Massonnet, Catherine, Walsh, Sean, Baginsky, Sacha, Bühlmann, Peter, Hennig, Lars, Hirsch‐Hoffmann, Matthias, Howell, Katharine A, Kahlau, Sabine, Radziejwoski, Amandine, Russenberger, Doris, Rutishauser, Dorothea, Small, Ian, Stekhoven, Daniel, Sulpice, Ronan, Svozil, Julia, Wuyts, Nathalie, Stitt, Mark, Hilson, Pierre, Granier, Christine, Gruissem, Wilhelm

“…Leaves have a central role in plant energy capture and carbon conversion and therefore must continuously adapt their development to prevailing environmental…”
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Analytical and Clinical Validation of Expressed Variants and Fusions From the Whole Transcriptome of Thyroid FNA Samples by Angell, Trevor E., Wirth, Lori J., Cabanillas, Maria E., Shindo, Maisie L., Cibas, Edmund S., Babiarz, Joshua E., Hao, Yangyang, Kim, Su Yeon, Walsh, P. Sean, Huang, Jing, Kloos, Richard T., Kennedy, Giulia C., Waguespack, Steven G.

“…Introduction: The Afirma® Xpression Atlas (XA) detects gene variants and fusions in thyroid nodule FNA samples from a curated panel of 511 genes using…”
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External validation of a radiomic signature to predict p16 (HPV) status from standard CT images of anal cancer patients by Leijenaar, Ralph T. H., Walsh, Sean, Akshayaa Vaidyanathan, Aliboni, Lorenzo, Sanchez, Victoria Lopez, Leech, Michelle, Joyce, Ronan, Gillham, Charles, Kridelka, Frédéric, Hustinx, Roland, Danthine, Denis, Occhipinti, Mariaelena, Vos, Wim, Guiot, Julien, Lambin, Philippe, Lovinfosse, Pierre

“…The paper deals with the evaluation of the performance of an existing and previously validated CT based radiomic signature, developed in oropharyngeal cancer…”
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Identification of usual interstitial pneumonia pattern using RNA-Seq and machine learning: challenges and solutions by Choi, Yoonha, Liu, Tiffany Ting, Pankratz, Daniel G, Colby, Thomas V, Barth, Neil M, Lynch, David A, Walsh, P Sean, Raghu, Ganesh, Kennedy, Giulia C, Huang, Jing

“…We developed a classifier using RNA sequencing data that identifies the usual interstitial pneumonia (UIP) pattern for the diagnosis of idiopathic pulmonary…”
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Analytical validation of the Percepta genomic sequencing classifier; an RNA next generation sequencing assay for the assessment of Lung Cancer risk of suspicious pulmonary nodules by Johnson, Marla K, Wu, Shuyang, Pankratz, Daniel G, Fedorowicz, Grazyna, Anderson, Jessica, Ding, Jie, Wong, Mei, Cao, Manqiu, Babiarz, Joshua, Lofaro, Lori, Walsh, P Sean, Kennedy, Giulia C, Huang, Jing

“…Bronchoscopy is a common procedure used for evaluation of suspicious lung nodules, but the low diagnostic sensitivity of bronchoscopy often results in…”
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Benefit of particle therapy in re-irradiation of head and neck patients. Results of a multicentric in silico ROCOCO trial by Eekers, Daniëlle B.P, Roelofs, Erik, Jelen, Urszula, Kirk, Maura, Granzier, Marlies, Ammazzalorso, Filippo, Ahn, Peter H, Janssens, Geert O.R.J, Hoebers, Frank J.P, Friedmann, Tobias, Solberg, Timothy, Walsh, Sean, Troost, Esther G.C, Kaanders, Johannes H.A.M, Lambin, Philippe

“…Abstract Background and Purpose In this multicentric in silico trial we compared photon, proton, and carbon-ion radiotherapy plans for re-irradiation of…”
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Big Data in radiation therapy: challenges and opportunities by Lustberg, Tim, van Soest, Johan, Jochems, Arthur, Deist, Timo, van Wijk, Yvonka, Walsh, Sean, Lambin, Philippe, Dekker, Andre

“…Data collected and generated by radiation oncology can be classified by the Volume, Variety, Velocity and Veracity (4Vs) of Big Data because they are spread…”
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Editorial: Imaging assessment of response to immunotherapy by Occhipinti, Mariaelena, Filippi, Andrea R, Walsh, Sean, van Meerbeeck, Jan P

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Parallel analysis of Arabidopsis circadian clock mutants reveals different scales of transcriptome and proteome regulation by Graf, Alexander, Coman, Diana, Uhrig, R. Glen, Walsh, Sean, Flis, Anna, Stitt, Mark, Gruissem, Wilhelm

“…The circadian clock regulates physiological processes central to growth and survival. To date, most plant circadian clock studies have relied on diurnal…”
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