Search Results - "Waller, Alison S"

Plant microbiome analysis after Metarhizium amendment reveals increases in abundance of plant growth-promoting organisms and maintenance of disease-suppressive soil by Barelli, Larissa, Waller, Alison S, Behie, Scott W, Bidochka, Michael J

“…The microbial community in the plant rhizosphere is vital to plant productivity and disease resistance. Alterations in the composition and diversity of species…”
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Assessment of metagenomic assembly using simulated next generation sequencing data by Mende, Daniel R, Waller, Alison S, Sunagawa, Shinichi, Järvelin, Aino I, Chan, Michelle M, Arumugam, Manimozhiyan, Raes, Jeroen, Bork, Peer

“…Due to the complexity of the protocols and a limited knowledge of the nature of microbial communities, simulating metagenomic sequences plays an important role…”
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Classification and quantification of bacteriophage taxa in human gut metagenomes by Waller, Alison S, Yamada, Takuji, Kristensen, David M, Kultima, Jens Roat, Sunagawa, Shinichi, Koonin, Eugene V, Bork, Peer

“…Bacteriophages have key roles in microbial communities, to a large extent shaping the taxonomic and functional composition of the microbiome, but data on the…”
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Role for urea in nitrification by polar marine Archaea by Alonso-Sáez, Laura, Waller, Alison S, Mende, Daniel R, Bakker, Kevin, Farnelid, Hanna, Yager, Patricia L, Lovejoy, Connie, Tremblay, Jean-Éric, Potvin, Marianne, Heinrich, Friederike, Estrada, Marta, Riemann, Lasse, Bork, Peer, Pedrós-Alió, Carlos, Bertilsson, Stefan

“…Despite the high abundance of Archaea in the global ocean, their metabolism and biogeochemical roles remain largely unresolved. We investigated the population…”
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Orthologous Gene Clusters and Taxon Signature Genes for Viruses of Prokaryotes by Kristensen, David M, Waller, Alison S, Yamada, Takuji, Bork, Peer, Mushegian, Arcady R, Koonin, Eugene V

“…OA  Article Usage Stats Services JB Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley…”
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Multiple Reductive-Dehalogenase-Homologous Genes Are Simultaneously Transcribed during Dechlorination by Dehalococcoides-Containing Cultures by Waller, Alison S, Krajmalnik-Brown, Rosa, Loffler, Frank E, Edwards, Elizabeth A

“…Classifications Services AEM Citing Articles Google Scholar PubMed Related Content Social Bookmarking CiteULike Delicious Digg Facebook Google+ Mendeley Reddit…”
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Transcriptional Analysis of a Dehalococcoides-Containing Microbial Consortium Reveals Prophage Activation by WALLER, Alison S, HUG, Laura A, MO, Kaiguo, RADFORD, Devon R, MAXWELL, Karen L, EDWARDS, Elizabeth A

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New insights into Dehalococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes by Islam, M Ahsanul, Waller, Alison S, Hug, Laura A, Provart, Nicholas J, Edwards, Elizabeth A, Mahadevan, Radhakrishnan

“…Organohalide respiration, mediated by Dehalococcoides mccartyi, is a useful bioremediation process that transforms ground water pollutants and known human…”
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Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours by Yamada, Takuji, Waller, Alison S, Raes, Jeroen, Zelezniak, Aleksej, Perchat, Nadia, Perret, Alain, Salanoubat, Marcel, Patil, Kiran R, Weissenbach, Jean, Bork, Peer

“…Despite the current wealth of sequencing data, one‐third of all biochemically characterized metabolic enzymes lack a corresponding gene or protein sequence,…”
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Perchlorate-reducing microorganisms isolated from contaminated sites by Waller, Alison S., Cox, Evan E., Edwards, Elizabeth A.

“…Summary An extensive microcosm survey of perchlorate‐contaminated sites was undertaken to assess the ability of indigenous microorganisms to degrade…”
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New insights into Dehaiococcoides mccartyi metabolism from a reconstructed metabolic network-based systems-level analysis of D. mccartyi transcriptomes by Islam, M. Ahsanul, Waller, Alison S, Hug, Laura A, Provart, Nicholas J, Edwards, Elizabeth A, Mahadevan, Radhakrishnan

“…Organohalide respiration, mediated by Dehalococcoides mccartyi, is a useful bioremediation process that transforms ground water pollutants and known human…”
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Classification and quantification of bacteriophage taxa in human gut metagenomes by Waller, Alison S, Yamada, Takuji, Kristensen, David M, Kultima, Jens Roat, Sunagawa, Shinichi, Koonin, Eugene V, Bork, Peer

“…Bacteriophages have key roles in microbial communities, to a large extent shaping the taxonomic and functional composition of the microbiome, but data on the…”
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Erratum: Classification and quantification of bacteriophage taxa in human gut metagenomes by Waller, Alison S, Yamada, Takuji, Kristensen, David M, Kultima, Jens Roat, Sunagawa, Shinichi, Koonin, Eugene V, Bork, Peer

“…Correction to: The ISME Journal (2014) 8, 1548–1550; doi:10.1038/ismej.2014.30; published online 13 March 2014 Since the publication of this article, the…”
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Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours by Yamada, Takuji, Waller, Alison S, Raes, Jeroen, Zelezniak, Aleksej, Perchat, Nadia, Perret, Alain, Salanoubat, Marcel, Patil, Kiran R, Weissenbach, Jean, Bork, Peer

“…Despite the current wealth of sequencing data, one-third of all biochemically characterized metabolic enzymes lack a corresponding gene or protein sequence,…”
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New Insights into Dehalococcoides mccartyi Metabolism from a Reconstructed Metabolic Network-Based Systems-Level Analysis of D. mccartyi Transcriptomes: e94808 by Islam, M Ahsanul, Waller, Alison S, Hug, Laura A, Provart, Nicholas J, Edwards, Elizabeth A, Mahadevan, Radhakrishnan

“…Organohalide respiration, mediated by Dehalococcoides mccartyi, is a useful bioremediation process that transforms ground water pollutants and known human…”
Get full text