Search Results - "Waese, Jamie"

ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology by Waese, Jamie, Fan, Jim, Pasha, Asher, Yu, Hans, Fucile, Geoffrey, Shi, Ruian, Cumming, Matthew, Kelley, Lawrence A., Sternberg, Michael J., Krishnakumar, Vivek, Ferlanti, Erik, Miller, Jason, Town, Chris, Stuerzlinger, Wolfgang, Provart, Nicholas J.

“…A big challenge in current systems biology research arises when different types of data must be accessed from separate sources and visualized using separate…”
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Analyzing referencing patterns in grey literature produced by influential global management consulting firms and international organizations by Saleem, Sumayya, Dhuey, Elizabeth, White, Linda, Waese, Jamie, Perlman, Michal

“…Given the growing influence of non-academic organizations in the policy sphere, it is important to investigate the evidence both produced by and relied on by…”
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The Bio-Analytic Resource for Plant Biology by Waese, Jamie, Provart, Nicholas J

“…Bioinformatic tools have become part of the way plant researchers undertake investigations. Large data sets encompassing genomes, transcriptomes, proteomes,…”
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50 years of Arabidopsis research: highlights and future directions by Provart, Nicholas J, Alonso, Jose, Assmann, Sarah M, Bergmann, Dominique, Brady, Siobhan M, Brkljacic, Jelena, Browse, John, Chapple, Clint, Colot, Vincent, Cutler, Sean, Dangl, Jeff, Ehrhardt, David, Friesner, Joanna D, Frommer, Wolf B, Grotewold, Erich, Meyerowitz, Elliot, Nemhauser, Jennifer, Nordborg, Magnus, Pikaard, Craig, Shanklin, John, Somerville, Chris, Stitt, Mark, Torii, Keiko U, Waese, Jamie, Wagner, Doris, McCourt, Peter

“…922 I. 922 II. 922 III. 925 IV. 925 V. 926 VI. 927 VII. 928 VIII. 929 IX. 930 X. 931 XI. 932 XII. 933 XIII. Natural variation and genome‐wide association…”
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An ‘eFP‐Seq Browser’ for visualizing and exploring RNA sequencing data by Sullivan, Alexander, Purohit, Priyank K., Freese, Nowlan H., Pasha, Asher, Esteban, Eddi, Waese, Jamie, Wu, Alison, Chen, Michelle, Chin, Chih Y., Song, Richard, Watharkar, Sneha R., Chan, Agnes P., Krishnakumar, Vivek, Vaughn, Matthew W., Town, Chris, Loraine, Ann E., Provart, Nicholas J.

“…Summary Improvements in next‐generation sequencing technologies have resulted in dramatically reduced sequencing costs. This has led to an explosion of…”
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The Bio-Analytic Resource: Data visualization and analytic tools for multiple levels of plant biology by Waese, Jamie, Provart, Nicholas J.

“…The Bio-Analytic Resource for Plant Biology (BAR) is a portal for accessing large data sets from approximately 15 different plant species, with a focus on…”
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Topo-phylogeny: Visualizing evolutionary relationships on a topographic landscape by Waese, Jamie, Provart, Nicholas J, Guttman, David S

“…Phylogenetic trees are the de facto standard for visualizing evolutionary relationships, but large trees can be difficult to interpret because they require a…”
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Gene Slider: sequence logo interactive data-visualization for education and research by Waese, Jamie, Pasha, Asher, Wang, Ting Ting, van Weringh, Anna, Guttman, David S, Provart, Nicholas J

“…Gene Slider helps visualize the conservation and entropy of orthologous DNA and protein sequences by presenting them as one long sequence logo that can be…”
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Toward a data infrastructure for the Plant Cell Atlas by Fahlgren, Noah, Kapoor, Muskan, Yordanova, Galabina, Papatheodorou, Irene, Waese, Jamie, Cole, Benjamin, Harrison, Peter, Ware, Doreen, Tickle, Timothy, Paten, Benedict, Burdett, Tony, Elsik, Christine G, Tuggle, Christopher K, Provart, Nicholas J

“…We review how a data infrastructure for the Plant Cell Atlas might be built using existing infrastructure and platforms. The Human Cell Atlas has developed an…”
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Analyzing referencing patterns in grey literature produced by influential global management consulting firms and international organizations by Sumayya Saleem, Elizabeth Dhuey, Linda White, Jamie Waese, Michal Perlman

“…Given the growing influence of non-academic organizations in the policy sphere, it is important to investigate the evidence both produced by and relied on by…”
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Anno genominis XX: 20 years of Arabidopsis genomics by Provart, Nicholas J, Brady, Siobhan M, Parry, Geraint, Schmitz, Robert J, Queitsch, Christine, Bonetta, Dario, Waese, Jamie, Schneeberger, Korbinian, Loraine, Ann E

“…Twenty years ago, the Arabidopsis thaliana genome sequence was published. This was an important moment as it was the first sequenced plant genome and…”
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New BAR tools for mining expression data and exploring Cis‐elements in Arabidopsis thaliana by Austin, Ryan S., Hiu, Shu, Waese, Jamie, Ierullo, Matthew, Pasha, Asher, Wang, Ting Ting, Fan, Jim, Foong, Curtis, Breit, Robert, Desveaux, Darrell, Moses, Alan, Provart, Nicholas J.

“…Summary Identifying sets of genes that are specifically expressed in certain tissues or in response to an environmental stimulus is useful for designing…”
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Data Visualization Tools for Large Biological Data Sets by Waese, Jamie M

“…Researchers have access to an ever-growing volume of data available at multiple levels of biological analysis. Many visual analytic tools have been developed…”
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An Evaluation of Interaction Methods for Controlling RSVP Displays in Visual Search Tasks by Waese, Jamie, Stuerzlinger, Wolfgang, Provart, Nicholas J.

“…Accurately identifying images with subtly varying features from a large set of similar images can be a challenging task. To succeed, viewers must perceive…”
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Aproposal for the production and marketing of a theatrical motion picture entitled Best Man by Waese, Jamie

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