Search Results - "WIUF, C"

Genome-wide study of association and interaction with maternal cytomegalovirus infection suggests new schizophrenia loci by Børglum, A D, Demontis, D, Grove, J, Pallesen, J, Hollegaard, M V, Pedersen, C B, Hedemand, A, Mattheisen, M, Uitterlinden, A, Nyegaard, M, Ørntoft, T, Wiuf, C, Didriksen, M, Nordentoft, M, Nöthen, M M, Rietschel, M, Ophoff, R A, Cichon, S, Yolken, R H, Hougaard, D M, Mortensen, P B, Mors, O

“…Genetic and environmental components as well as their interaction contribute to the risk of schizophrenia, making it highly relevant to include environmental…”
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Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis by Gilbert, M. Thomas P., Binladen, Jonas, Miller, Webb, Wiuf, Carsten, Willerslev, Eske, Poinar, Hendrik, Carlson, John E., Leebens-Mack, James H., Schuster, Stephan C.

“…Although ancient DNA (aDNA) miscoding lesions have been studied since the earliest days of the field, their nature remains a source of debate. A variety of…”
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Genome-wide analysis of allelic imbalance in prostate cancer using the Affymetrix 50K SNP mapping array by TØRRING, N, BORRE, M, SØRENSEN, K. D, ANDERSEN, C. L, WIUF, C, ØRNTOFT, T. F

“…Prostate cancer (PCa) is the most commonly diagnosed non-cutaneous cancer in male subjects in Western countries. The widespread use of prostate-specific…”
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Are microRNAs located in genomic regions associated with cancer? by LAMY, P, ANDERSEN, Cl, DYRSKJOT, L, TORRING, N, ORNTOFT, T, WIUF, C

“…We report on the location of 283 miRNAs in the human genome in relation to copy number changes in three distinct types of tumours: prostate, bladder and colon…”
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HYPOXIC GENE EXPRESSION WITH PROGNOSTIC AND PREDICTIVE IMPACT FOR HYPOXIC MODIFICATION IN HEAD AND NECK CANCER by Toustrup, K, Serensen, B, Nordsmark, M, Wiuf, C, Alsner, J, Overgaard, J

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Statistical alignment: computational properties, homology testing and goodness-of-fit by Hein, J, Wiuf, C, Knudsen, B, Møller, M B, Wibling, G

“…The model of insertions and deletions in biological sequences, first formulated by Thorne, Kishino, and Felsenstein in 1991 (the TKF91 model), provides a basis…”
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On the Number of Ancestors to a DNA Sequence by Wiuf, C, Hein, J

“…If homologous sequences in a population are not subject to recombination, they can all be traced back to one ancestral sequence. However, the rest of our…”
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A codon-based model designed to describe lentiviral evolution by Pedersen, A K, Wiuf, C, Christiansen, F B

“…A codon-based model designed to describe lentiviral evolution is developed. The model incorporates unequal base compositions in the three codon positions and…”
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Subnets of Scale-Free Networks Are Not Scale-Free: Sampling Properties of Networks by Michael P. H. Stumpf, Wiuf, Carsten, May, Robert M.

“…Most studies of networks have only looked at small subsets of the true network. Here, we discuss the sampling properties of a network's degree distribution…”
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Do delta F508 heterozygotes have a selective advantage? by Wiuf, C

“…In this paper the fitness of the delta F508 heterozygote is assessed and the age of the delta F508 mutation in the cystic fibrosis locus is estimated. Data…”
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Diverse Plant and Animal Genetic Records from Holocene and Pleistocene Sediments by Willerslev, Eske, Hansen, Anders J., Binladen, Jonas, Brand, Tina B., M. Thomas P. Gilbert, Shapiro, Beth, Bunce, Michael, Wiuf, Carsten, Gilichinsky, David A., Cooper, Alan

“…Genetic analyses of permafrost and temperate sediments reveal that plant and animal DNA may be preserved for long periods, even in the absence of obvious…”
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Co-clustering and visualization of gene expression data and gene ontology terms for Saccharomyces cerevisiae using self-organizing maps by Brameier, Markus, Wiuf, Carsten

“…We propose a novel co-clustering algorithm that is based on self-organizing maps (SOMs). The method is applied to group yeast ( Saccharomyces cerevisiae) genes…”
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Sampling properties of random graphs: the degree distribution by Stumpf, Michael P H, Wiuf, Carsten

“…We discuss two sampling schemes for selecting random subnets from a network, random sampling and connectivity dependent sampling, and investigate how the…”
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SOX4 expression in bladder carcinoma : Clinical aspects and in vitro functional characterization by AABOE, Mads, BIRKENKAMP-DEMTRODER, Karin, WIUF, Carsten, SØRENSEN, Flemming Brandt, THYKJAER, Thomas, SAUTER, Guido, JENSEN, Klaus Møller-Ernst, DYRSKJØT, Lars, ØRNTOFT, Torben

“…The human transcription factor SOX4 was 5-fold up-regulated in bladder tumors compared with normal tissue based on whole-genome expression profiling of 166…”
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Long-term persistence of bacterial DNA by Willerslev, Eske, Hansen, Anders J., Rønn, Regin, Brand, Tina B., Barnes, Ian, Wiuf, Carsten, Gilichinsky, David, Mitchell, David, Cooper, Alan

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Inference on Recombination and Block Structure Using Unphased Data by Wiuf, Carsten

“…In this study compatibility with a tree for unphased genotype data is discussed. If the data are compatible with a tree, the data are consistent with an…”
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The Coalescent With Gene Conversion by Wiuf, Carsten, Hein, Jotun

“…In this article we develop a coalescent model with intralocus gene conversion. The distribution of the tract length is geometric in concordance with results…”
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Crosslinks Rather Than Strand Breaks Determine Access to Ancient DNA Sequences From Frozen Sediments by Hansen, Anders J, Mitchell, David L, Wiuf, Carsten, Paniker, Lakshmi, Brand, Tina B, Binladen, Jonas, Gilichinsky, David A, Ronn, Regin, Willerslev, Eske

“…Diagenesis was studied in DNA obtained from Siberian permafrost (permanently frozen soil) ranging from 10,000 to 400,000 years in age. Despite optimal…”
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Recombination in Human Mitochondrial DNA? by Wiuf, C

“…The possibility of recombination in human mitochondrial DNA (mtDNA) has been hotly debated over the last few years. In this study, a general model of…”
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A simulation study of the reliability of recombination detection methods by Wiuf, C, Christensen, T, Hein, J

“…There exist many methods to detect recombination or mosaic structure in a sample of DNA sequences. But how reliable are they? Four methods were investigated…”
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