Search Results - "WILSON, Manda"

Integrative Genomic Profiling of Human Prostate Cancer by Taylor, Barry S., Schultz, Nikolaus, Hieronymus, Haley, Gopalan, Anuradha, Xiao, Yonghong, Carver, Brett S., Arora, Vivek K., Kaushik, Poorvi, Cerami, Ethan, Reva, Boris, Antipin, Yevgeniy, Mitsiades, Nicholas, Landers, Thomas, Dolgalev, Igor, Major, John E., Wilson, Manda, Socci, Nicholas D., Lash, Alex E., Heguy, Adriana, Eastham, James A., Scher, Howard I., Reuter, Victor E., Scardino, Peter T., Sander, Chris, Sawyers, Charles L., Gerald, William L.

“…Annotation of prostate cancer genomes provides a foundation for discoveries that can impact disease understanding and treatment. Concordant assessment of DNA…”
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Genomic and Biological Characterization of Exon 4 KRAS Mutations in Human Cancer by JANAKIRAMAN, Manickam, VAKIANI, Efsevia, PERSAUD, Yogindra, LEVINE, Douglas A, FAGIN, James A, JHANWAR, Suresh C, MARIADASON, John M, LASH, Alex, LADANYI, Marc, SALTZ, Leonard B, HEGUY, Adriana, PATY, Philip B, ZHAOSHI ZENG, SOLIT, David B, PRATILAS, Christine A, TAYLOR, Barry S, CHITALE, Dhananjay, HALILOVIC, Ensar, WILSON, Manda, HUBERMAN, Kety, RICARTE, Julio Cezar

“…Mutations in RAS proteins occur widely in human cancer. Prompted by the confirmation of KRAS mutation as a predictive biomarker of response to epidermal growth…”
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Harnessing Technology to Improve Clinical Trials: Study of Real-Time Informatics to Collect Data, Toxicities, Image Response Assessments, and Patient-Reported Outcomes in a Phase II Clinical Trial by PIETANZA, M. Catherine, BASCH, Ethan M, GABOW, Aaron, LATIF, Marcia, LIN, Kai-Hsiung, QINFEI WU, KASS, Samantha L, MILLER, Claire P, TYSON, Leslie, SUMNER, Dyana K, BERKOWITZ-HERGIANTO, Alison, SIMA, Camelia S, LASH, Alex, KRIS, Mark G, SCHWARTZ, Lawrence H, GINSBERG, Michelle S, BINSHENG ZHAO, SHOUERY, Marwan, SHAW, Mary, ROGAK, Lauren J, WILSON, Manda

“…In clinical trials, traditional monitoring methods, paper documentation, and outdated collection systems lead to inaccuracies of study information and…”
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microRNA.org resource: targets and expression by Betel, Doron, Wilson, Manda, Gabow, Aaron, Marks, Debora S, Sander, Chris

“…MicroRNA.org (http://www.microrna.org) is a comprehensive resource of microRNA target predictions and expression profiles. Target predictions are based on a…”
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Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal by de Bruijn, Ino, Kundra, Ritika, Mastrogiacomo, Brooke, Tran, Thinh Ngoc, Sikina, Luke, Mazor, Tali, Li, Xiang, Ochoa, Angelica, Zhao, Gaofei, Lai, Bryan, Abeshouse, Adam, Baiceanu, Diana, Ciftci, Ersin, Dogrusoz, Ugur, Dufilie, Andrew, Erkoc, Ziya, Garcia Lara, Elena, Fu, Zhaoyuan, Gross, Benjamin, Haynes, Charles, Heath, Allison, Higgins, David, Jagannathan, Prasanna, Kalletla, Karthik, Kumari, Priti, Lindsay, James, Lisman, Aaron, Leenknegt, Bas, Lukasse, Pieter, Madela, Divya, Madupuri, Ramyasree, van Nierop, Pim, Plantalech, Oleguer, Quach, Joyce, Resnick, Adam C, Rodenburg, Sander Y A, Satravada, Baby A, Schaeffer, Fedde, Sheridan, Robert, Singh, Jessica, Sirohi, Rajat, Sumer, Selcuk Onur, van Hagen, Sjoerd, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhu, Kelsey, Rusk, Nicole, Brown, Samantha, Lavery, Jessica A, Panageas, Katherine S, Rudolph, Julia E, LeNoue-Newton, Michele L, Warner, Jeremy L, Guo, Xindi, Hunter-Zinck, Haley, Yu, Thomas V, Pilai, Shirin, Nichols, Chelsea, Gardos, Stuart M, Philip, John, Kehl, Kenneth L, Riely, Gregory J, Schrag, Deborah, Lee, Jocelyn, Fiandalo, Michael V, Sweeney, Shawn M, Pugh, Trevor J, Sander, Chris, Cerami, Ethan, Gao, Jianjiong, Schultz, Nikolaus

“…International cancer registries make real-world genomic and clinical data available, but their joint analysis remains a challenge. AACR Project GENIE, an…”
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Automated real-world data integration improves cancer outcome prediction by Jee, Justin, Fong, Christopher, Pichotta, Karl, Tran, Thinh Ngoc, Luthra, Anisha, Waters, Michele, Fu, Chenlian, Altoe, Mirella, Liu, Si-Yang, Maron, Steven B., Ahmed, Mehnaj, Kim, Susie, Pirun, Mono, Chatila, Walid K., de Bruijn, Ino, Pasha, Arfath, Kundra, Ritika, Gross, Benjamin, Mastrogiacomo, Brooke, Aprati, Tyler J., Liu, David, Gao, JianJiong, Capelletti, Marzia, Pekala, Kelly, Loudon, Lisa, Perry, Maria, Bandlamudi, Chaitanya, Donoghue, Mark, Satravada, Baby Anusha, Martin, Axel, Shen, Ronglai, Chen, Yuan, Brannon, A. Rose, Chang, Jason, Braunstein, Lior, Li, Anyi, Safonov, Anton, Stonestrom, Aaron, Sanchez-Vela, Pablo, Wilhelm, Clare, Robson, Mark, Scher, Howard, Ladanyi, Marc, Reis-Filho, Jorge S., Solit, David B., Jones, David R., Gomez, Daniel, Yu, Helena, Chakravarty, Debyani, Yaeger, Rona, Abida, Wassim, Park, Wungki, O’Reilly, Eileen M., Garcia-Aguilar, Julio, Socci, Nicholas, Sanchez-Vega, Francisco, Carrot-Zhang, Jian, Stetson, Peter D., Levine, Ross, Rudin, Charles M., Berger, Michael F., Shah, Sohrab P., Schrag, Deborah, Razavi, Pedram, Kehl, Kenneth L., Li, Bob T., Riely, Gregory J., Schultz, Nikolaus, Lisman, Aaron, Zhao, Gaofei, de Bruijn, Ino, Chatila, Walid K., Li, Xiang, Kohli, Aarman, Moore, Darin, Lim, Raymond, Pollard, Tom, Sheridan, Robert, Wang, Avery, Chennault, Calla, Wilson, Manda, Zhang, Hongxin, Pimienta, Robert, Rangavajhala, Surya, Subramanian, Guru, Garcia, Jowel, Rachuri, Naveen, Boehm, Kevin, Parker, Mitchell, Walch, Henry, Nandakumar, Subhiksha, Eichholz, Jordan, Kris, Ayush, Manca, Paolo, Bai, Xuechun, Agbamu, Tejiri, U, Justin, Bi, Xinran

“…The digitization of health records and growing availability of tumour DNA sequencing provide an opportunity to study the determinants of cancer outcomes with…”
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Overcoming Barriers to Tumor Genomic Profiling through Direct-to-Patient Outreach by Doe-Tetteh, Seyram A, Camp, Sabrina Y, Reales, Dalicia, Crowdis, Jett, Noronha, Anne Marie, Wolff, Bernadette, Alano, Tina, Galle, Jesse, Selcuklu, S Duygu, Viale, Agnes, Socci, Nicholas D, Liu, Ying L, Tew, William P, Aghajanian, Carol, Ladanyi, Marc, He, Meng Xiao, AlDubayan, Saud H, Mazor, Roei David, Shpilberg, Ofer, Hershkovitz-Rokah, Oshrat, Riancho, Jose A, Hernandez, Jose L, Gonzalez-Vela, M Carmen, Buthorn, Justin J, Wilson, Manda, Webber, Amy E, Yabe, Mariko, Petrova-Drus, Kseniya, Rosenblum, Marc, Durham, Benjamin H, Abdel-Wahab, Omar, Berger, Michael F, Donoghue, Mark T A, Kung, Andrew L, Glade Bender, Julia, Shukla, Neerav N, Funt, Samuel A, Dogan, Ahmet, Soslow, Robert A, Al-Ahmadie, Hikmat, Feldman, Darren R, Van Allen, Eliezer M, Diamond, Eli L, Solit, David B

“…To overcome barriers to genomic testing for patients with rare cancers, we initiated a program to offer free clinical tumor genomic testing worldwide to…”
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OncoTree: A Cancer Classification System for Precision Oncology by Kundra, Ritika, Zhang, Hongxin, Sheridan, Robert, Sirintrapun, Sahussapont Joseph, Wang, Avery, Ochoa, Angelica, Wilson, Manda, Gross, Benjamin, Sun, Yichao, Madupuri, Ramyasree, Satravada, Baby A, Reales, Dalicia, Vakiani, Efsevia, Al-Ahmadie, Hikmat A, Dogan, Ahmet, Arcila, Maria, Zehir, Ahmet, Maron, Steven, Berger, Michael F, Viaplana, Cristina, Janeway, Katherine, Ducar, Matthew, Sholl, Lynette, Dogan, Snjezana, Bedard, Philippe, Surrey, Lea F, Sanchez, Iker Huerga, Syed, Aijaz, Rema, Anoop Balakrishnan, Chakravarty, Debyani, Suehnholz, Sarah, Nissan, Moriah, Iyer, Gopakumar V, Murali, Rajmohan, Bouvier, Nancy, Soslow, Robert A, Hyman, David, Younes, Anas, Intlekofer, Andrew, Harding, James J, Carvajal, Richard D, Sabbatini, Paul J, Abou-Alfa, Ghassan K, Morris, Luc, Janjigian, Yelena Y, Gallagher, Meighan M, Soumerai, Tara A, Mellinghoff, Ingo K, Hakimi, Abraham A, Fury, Matthew, Huse, Jason T, Bagrodia, Aditya, Hameed, Meera, Thomas, Stacy, Gardos, Stuart, Cerami, Ethan, Mazor, Tali, Kumari, Priti, Raman, Pichai, Shivdasani, Priyanka, MacFarland, Suzanne, Newman, Scott, Waanders, Angela, Gao, Jianjiong, Solit, David, Schultz, Nikolaus

“…Cancer classification is foundational for patient care and oncology research. Systems such as International Classification of Diseases for Oncology (ICD-O),…”
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Genomic analysis of early-stage lung cancer reveals a role for TP53 mutations in distant metastasis by Van Egeren, Debra, Kohli, Khushi, Warner, Jeremy L., Bedard, Philippe L., Riely, Gregory, Lepisto, Eva, Schrag, Deborah, LeNoue-Newton, Michele, Catalano, Paul, Kehl, Kenneth L., Michor, Franziska

“…Patients with non-small cell lung cancer (NSCLC) who have distant metastases have a poor prognosis. To determine which genomic factors of the primary tumor are…”
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Abstract 207: The cBioPortal for Cancer Genomics by Gao, Jianjiong, Mazor, Tali, de Bruijn, Ino, Abeshouse, Adam, Baiceanu, Diana, Erkoc, Ziya, Gross, Benjamin, Higgins, David, Jagannathan, Prasanna K., Kalletla, Karthik, Kumari, Priti, Kundra, Ritika, Li, Xiang, Lindsay, James, Lisman, Aaron, Lukasse, Pieter, Madala, Divya, Madupuri, Ramyasree, Ochoa, Angelica, Plantalech, Oleguer, Quach, Joyce, Rodenburg, Sander, Satravada, Anusha, Schaeffer, Fedde, Sheridan, Robert, Sikina, Lucas, Sumer, S. Onur, Sun, Yichao, van Dijk, Paul, van Nierop, Pim, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, van Hagen, Sjoerd, van Bochove, Kees, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Schultz, Nikolaus

“…Abstract The cBioPortal for Cancer Genomics is an open-source software platform that enables interactive, exploratory analysis of large-scale cancer genomics…”
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Abstract 3209: The cBioPortal for Cancer Genomics by Gao, Jianjiong, Mazor, Tali, Abeshouse, Adam, de Bruijn, Ino, Gross, Benjamin, Kalletla, Karthik, Kumari, Priti, Kundra, Ritika, Li, Xiang, Lindsay, James, Lisman, Aaron, Lukasse, Pieter, Madupuri, Ramyasree, Ochoa, Angelica, Plantalech, Oleguer, Rodenburg, Sander, Schaeffer, Fedde, Sheridan, Robert, Sikina, Lucas, Su, Jing, Sumer, S. Onur, Sun, Yichao, van Dijk, Paul, van Hagen, Sjoerd, van Nierop, Pim, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, Zhu, Kelsey, van Bochove, Kees, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Schultz, Nikolaus

“…Abstract The cBioPortal for Cancer Genomics is an open-source software platform that enables interactive, exploratory analysis of large-scale cancer genomics…”
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Abstract 910: The cBioPortal for cancer genomics by Gao, Jianjiong, Mazor, Tali, Abeshouse, Adam, Ciftci, Ersin, Bruijn, Ino de, Gross, Benjamin, Kalletla, Karthik, Kumari, Priti, Kundra, Ritika, Lindsay, James, Lisman, Aaron, Lukasse, Pieter, Madupuri, Ramyasree, Ochoa, Angelica, Plantalech, Oleguer, Raman, Pichai, Schaeffer, Fedde, Sheridan, Robert, Su, Jing, Sumer, S. Onur, Sun, Yichao, Tan, Sander, Hagen, Sjoerd van, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, Zhu, Kelsey, Bochove, Kees van, Dogrusoz, Ugur, Pugh, Trevor J., Resnick, Adam, Sander, Chris, Cerami, Ethan, Schultz, Nikolaus

“…Abstract The cBioPortal for Cancer Genomics is an open-source software platform that enables interactive, exploratory analysis of large-scale cancer genomics…”
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iCAVE: an open source tool for visualizing biomolecular networks in 3D, stereoscopic 3D and immersive 3D by Liluashvili, Vaja, Kalayci, Selim, Fluder, Eugene, Wilson, Manda, Gabow, Aaron, Gümüş, Zeynep H.

“…Visualizations of biomolecular networks assist in systems-level data exploration in many cellular processes. Data generated from high-throughput experiments…”
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Abstract 923: The cBioPortal for Cancer Genomics: An intuitive open-source platform for exploration, analysis and visualization of cancer genomics data by Gao, Jianjiong, Mazor, Tali, Ciftci, Ersin, Raman, Pichai, Lukasse, Pieter, Bahceci, Istemi, Sigaras, Alexandros, Abeshouse, Adam, Bruijn, Ino de, Gross, Benjamin, Kundra, Ritika, Lisman, Aaron, Ochoa, Angelica, Sheridan, Robert, Su, Jing, Sumer, Selcuk O., Sun, Yichao, Wang, Avery, Wang, Jiaojiao, Wilson, Manda, Zhang, Hongxin, Kumari, Priti, Lindsay, James, Kalletla, Karthik, Zhu, Kelsey, Plantalech, Oleguer, Schaeffer, Fedde, Tan, Sander, Zaal, Dionne, Hagen, Sjoerd van, Bochove, Kees van, Dogrusoz, Ugur, Pugh, Trevor J., Resnick, Adam, Sander, Chris, Schultz, Nikolaus, Cerami, Ethan

“…Abstract The cBioPortal for Cancer Genomics is an open source software platform that enables interactive, exploratory analysis of large-scale cancer genomics…”
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Abstract 1156: Genome Nexus: A comprehensive resource for the annotation and interpretation of genomic variants in cancer by de Bruijn, Ino, Li, Xiang, Sumer, Onur, Gross, Benjamin, Sheridan, Robert, Ochoa, Angelica, Wilson, Manda, Wang, Avery, Zhang, Hongxin, Lisman, Aaron, Abeshouse, Adam, Rodenburg, Sander, van Hagen, Sjoerd, Fijneman, Remond, Meijer, Gerrit, Schultz, Nikolaus, Gao, Jianjiong

“…Abstract Interpreting genomic variants in tumor samples presents a challenge in research and the clinical setting. A major barrier is that information about…”
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Genome Nexus: A Comprehensive Resource for the Annotation and Interpretation of Genomic Variants in Cancer by de Bruijn, Ino, Li, Xiang, Sumer, Selcuk Onur, Gross, Benjamin, Sheridan, Robert, Ochoa, Angelica, Wilson, Manda, Wang, Avery, Zhang, Hongxin, Lisman, Aaron, Abeshouse, Adam, Zhang, Emily, Thum, Alice, Sadagopan, Ananthan, Heins, Zachary, Kandoth, Cyriac, Rodenburg, Sander, Tan, Sander, Lukasse, Pieter, van Hagen, Sjoerd, Fijneman, Remond J A, Meijer, Gerrit A, Schultz, Nikolaus, Gao, Jianjiong

“…Interpretation of genomic variants in tumor samples still presents a challenge in research and the clinical setting. A major issue is that information for…”
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Abstract 1249: cBioPortal for Cancer Genomics by Mazor, Tali, de Bruijn, Ino, AlHamad, Rima, Chennault, Calla, Dubin, Corey, Easton-Marks, Jeremy, Fu, Zhaoyuan, Gross, Benjamin, Haynes, Charles, Higgins, David M., Hwee, Jason, Jagannathan, Prasanna K., Kalafati, Mirella, Kalletla, Karthik, Ko, James, Kuijpers, Tim, Kumar, Sowmiyaa, Kumari, Priti, Kundra, Ritika, Lai, Bryan, Li, Xiang, Lindsay, James, Lisman, Aaron, Lu, Qi-Xuan, Madupuri, Ramyasree, Ochoa, Angelica, Özgül, Yusuf Z., Plantalech, Oleguer, Pon, Matthijs N., Satravada, Baby A., Singh, Jessica, Sumer, Selcuk Onur, van Nierop, Pim, Vleugels, Floris, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Gao, Jianjiong, Schultz, Nikolaus

“…Abstract cBioPortal for Cancer Genomics is an open-source platform for interactive, exploratory analysis of large-scale clinico-genomic data. cBioPortal…”
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Abstract 2607: The cBioPortal for Cancer Genomics: an open source platform for accessing and interpreting complex cancer genomics data in the era of precision medicine by Gao, Jianjiong, Ciftci, Ersin, Raman, Pichai, Lukasse, Pieter, Bahceci, Istemi, Abeshouse, Adam, Chen, Hsiao-Wei, Bruijn, Ino de, Gross, Benjamin, Heins, Zachary, Kundra, Ritika, Lisman, Aaron, Ochoa, Angelica, Sheridan, Robert, Sumer, Onur, Sun, Yichao, Wang, Jiaojiao, Wilson, Manda, Zhang, Hongxin, Xu, James, Dufilie, Andy, Kumari, Priti, Lindsay, James, Cros, Anthony, Kalletla, Karthik, Schaeffer, Fedde, Tan, Sander, Hagen, Sjoerd van, Reis-Filho, Jorge, Bochove, Kees van, Dogrusoz, Ugur, Pugh, Trevor, Resnick, Adam, Sander, Chris, Cerami, Ethan, Schultz, Nikolaus

“…Abstract The cBioPortal for Cancer Genomics is an open-access portal (http://cbioportal.org) that enables interactive, exploratory analysis of large-scale…”
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Abstract 4256: cBioPortal for Cancer Genomics by de Bruijn, Ino, Mazor, Tali, Abeshouse, Adam, Baiceanu, Diana, Carrero, Stephanie, Garcia Lara, Elena, Gross, Benjamin, Higgins, David M., Jagannathan, Prasanna K., Kumari, Priti, Kundra, Ritika, Lai, Bryan, Li, Xiang, Lindsay, James, Lisman, Aaron, Madala, Divya, Madupuri, Ramyasree, Ochoa, Angelica, Özgül, Yusuf Ziya, Plantalech, Oleguer, Rodenburg, Sander, Satravada, Baby Anusha, Sheridan, Robert, Sikina, Lucas, Singh, Jessica, Sumer, S Onur, Sun, Yichao, van Nierop, Pim, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, van Hagen, Sjoerd, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Gao, Jianjiong, Schultz, Nikolaus

“…Abstract cBioPortal for Cancer Genomics is an open-source platform for interactive, exploratory analysis of large-scale clinico-genomic data sets. cBioPortal…”
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Abstract 1155: cBioPortal for cancer genomics by Gao, Jianjiong, Mazor, Tali, de Bruijn, Ino, Abeshouse, Adam, Baiceanu, Diana, Erkoc, Ziya, Lara, Elena Garcia, Gross, Benjamin, Higgins, David M., Jagannathan, Prasanna K., Kumari, Priti, Kundra, Ritika, Li, Xiang, Lindsay, James, Lisman, Aaron, Madala, Divya, Madupuri, Ramyasree, Ochoa, Angelica, Plantalech, Oleguer, Rodenburg, Sander, Satravada, Baby A., Sheridan, Robert, Sikina, Lucas, Singh, Jessica, Sumer, S. Onur, Sun, Yichao, van Nierop, Pim, Wang, Avery, Wilson, Manda, Zhang, Hongxin, Zhao, Gaofei, van Hagen, Sjoerd, van Bochove, Kees, Dogrusoz, Ugur, Heath, Allison, Resnick, Adam, Pugh, Trevor J., Sander, Chris, Cerami, Ethan, Schultz, Nikolaus

“…Abstract cBioPortal for Cancer Genomics is an open-source platform for interactive, exploratory analysis of large-scale cancer genomics data sets. cBioPortal…”
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