Search Results - "Voytik, Eugenia"

diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition by Meier, Florian, Brunner, Andreas-David, Frank, Max, Ha, Annie, Bludau, Isabell, Voytik, Eugenia, Kaspar-Schoenefeld, Stephanie, Lubeck, Markus, Raether, Oliver, Bache, Nicolai, Aebersold, Ruedi, Collins, Ben C., Röst, Hannes L., Mann, Matthias

“…Data-independent acquisition modes isolate and concurrently fragment populations of different precursors by cycling through segments of a predefined precursor…”
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Deep learning the collisional cross sections of the peptide universe from a million experimental values by Meier, Florian, Köhler, Niklas D., Brunner, Andreas-David, Wanka, Jean-Marc H., Voytik, Eugenia, Strauss, Maximilian T., Theis, Fabian J., Mann, Matthias

“…The size and shape of peptide ions in the gas phase are an under-explored dimension for mass spectrometry-based proteomics. To investigate the nature and…”
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AlphaPeptDeep: a modular deep learning framework to predict peptide properties for proteomics by Zeng, Wen-Feng, Zhou, Xie-Xuan, Willems, Sander, Ammar, Constantin, Wahle, Maria, Bludau, Isabell, Voytik, Eugenia, Strauss, Maximillian T., Mann, Matthias

“…Machine learning and in particular deep learning (DL) are increasingly important in mass spectrometry (MS)-based proteomics. Recent DL models can predict the…”
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Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studies by Geyer, Philipp E, Voytik, Eugenia, Treit, Peter V, Doll, Sophia, Kleinhempel, Alisa, Niu, Lili, Müller, Johannes B, Buchholtz, Marie‐Luise, Bader, Jakob M, Teupser, Daniel, Holdt, Lesca M, Mann, Matthias

“…Plasma and serum are rich sources of information regarding an individual's health state, and protein tests inform medical decision making. Despite major…”
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AlphaPept: a modern and open framework for MS-based proteomics by Strauss, Maximilian T., Bludau, Isabell, Zeng, Wen-Feng, Voytik, Eugenia, Ammar, Constantin, Schessner, Julia P., Ilango, Rajesh, Gill, Michelle, Meier, Florian, Willems, Sander, Mann, Matthias

“…In common with other omics technologies, mass spectrometry (MS)-based proteomics produces ever-increasing amounts of raw data, making efficient analysis a…”
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A practical guide to interpreting and generating bottom‐up proteomics data visualizations by Schessner, Julia Patricia, Voytik, Eugenia, Bludau, Isabell

“…Mass‐spectrometry based bottom‐up proteomics is the main method to analyze proteomes comprehensively and the rapid evolution of instrumentation and data…”
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Rapid and In-Depth Coverage of the (Phospho-)Proteome With Deep Libraries and Optimal Window Design for dia-PASEF by Skowronek, Patricia, Thielert, Marvin, Voytik, Eugenia, Tanzer, Maria C., Hansen, Fynn M., Willems, Sander, Karayel, Özge, Brunner, Andreas-David, Meier, Florian, Mann, Matthias

“…Data-independent acquisition (DIA) methods have become increasingly attractive in mass spectrometry–based proteomics because they enable high data completeness…”
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AlphaMap: an open-source Python package for the visual annotation of proteomics data with sequence-specific knowledge by Voytik, Eugenia, Bludau, Isabell, Willems, Sander, Hansen, Fynn M, Brunner, Andreas-David, Strauss, Maximilian T, Mann, Matthias

“…Abstract Summary Integrating experimental information across proteomic datasets with the wealth of publicly available sequence annotations is a crucial part in…”
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AlphaTims: Indexing Trapped Ion Mobility Spectrometry–TOF Data for Fast and Easy Accession and Visualization by Willems, Sander, Voytik, Eugenia, Skowronek, Patricia, Strauss, Maximilian T., Mann, Matthias

“…High-resolution MS-based proteomics generates large amounts of data, even in the standard LC–tandem MS configuration. Adding an ion mobility dimension vastly…”
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D03 Quality control for plasma and cerebrospinal fluid samples using mass spectrometry by Skotte, Niels H, Geyer, Phillip E, Steger, Martin, Treit, Peter V, Voytik, Eugenia, Hellem, Marie NN, Nielsen, Jørgen E, Mann, Matthias

“…Identification and quantification of disease-associated proteins in human biofluids is much needed for monitoring disease progression in HD gene expression…”
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