Search Results - "Volkening, D"

Viral proteogenomic and expression profiling during productive replication of a skin-tropic herpesvirus in the natural host by Volkening, Jeremy D, Spatz, Stephen J, Ponnuraj, Nagendraprabhu, Akbar, Haji, Arrington, Justine V, Vega-Rodriguez, Widaliz, Jarosinski, Keith W

“…Efficient transmission of herpesviruses is essential for dissemination in host populations; however, little is known about the viral genes that mediate…”
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Algal ancestor of land plants was preadapted for symbiosis by Delaux, Pierre-Marc, Radhakrishnan, Guru V., Jayaraman, Dhileepkumar, Cheem, Jitender, Malbreil, Mathilde, Volkening, Jeremy D., Sekimoto, Hiroyuki, Nishiyama, Tomoaki, Melkonian, Michael, Pokorny, Lisa, Rothfels, Carl J., Sederoff, Heike Winter, Stevenson, Dennis W., Surek, Barbara, Zhang, Yong, Sussman, Michael R., Dunand, Christophe, Morris, Richard J., Roux, Christophe, Wong, Gane Ka-Shu, Oldroyd, Giles E. D., Ané, Jean-Michel

“…Colonization of land by plants was a major transition on Earth, but the developmental and genetic innovations required for this transition remain unknown…”
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Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology by Taylor, Tonya L., Volkening, Jeremy D., DeJesus, Eric, Simmons, Mustafa, Dimitrov, Kiril M., Tillman, Glenn E., Suarez, David L., Afonso, Claudio L.

“…U.S. public health agencies have employed next-generation sequencing (NGS) as a tool to quickly identify foodborne pathogens during outbreaks. Although…”
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Symbiosis and the social network of higher plants by Venkateshwaran, Muthusubramanian, Volkening, Jeremy D, Sussman, Michael R, Ané, Jean-Michel

“…► Most plants associate with arbuscular mycorrhizal fungi using an ancient and highly conserved SYM pathway. ► Most of this pathway has been lost in some plant…”
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Genomic basis for the convergent evolution of electric organs by Gallant, Jason R., Traeger, Lindsay L., Volkening, Jeremy D., Moffett, Howell, Chen, Po-Hao, Novina, Carl D., Phillips, George N., Anand, Rene, Wells, Gregg B., Pinch, Matthew, Güth, Robert, Unguez, Graciela A., Albert, James S., Zakon, Harold H., Samanta, Manoj P., Sussman, Michael R.

“…Little is known about the genetic basis of convergent traits that originate repeatedly over broad taxonomic scales. The myogenic electric organ has evolved six…”
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A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti by Marx, Harald, Minogue, Catherine E, Jayaraman, Dhileepkumar, Richards, Alicia L, Kwiecien, Nicholas W, Siahpirani, Alireza F, Rajasekar, Shanmugam, Maeda, Junko, Garcia, Kevin, Del Valle-Echevarria, Angel R, Volkening, Jeremy D, Westphall, Michael S, Roy, Sushmita, Sussman, Michael R, Ané, Jean-Michel, Coon, Joshua J

“…A proteomic atlas of a model legume and its rhizobial symbiont provides a resource for understanding symbiotic nitrogen fixation. Legumes are essential…”
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A robust and cost-effective approach to sequence and analyze complete genomes of small RNA viruses by Dimitrov, Kiril M, Sharma, Poonam, Volkening, Jeremy D, Goraichuk, Iryna V, Wajid, Abdul, Rehmani, Shafqat Fatima, Basharat, Asma, Shittu, Ismaila, Joannis, Tony M, Miller, Patti J, Afonso, Claudio L

“…Next-generation sequencing (NGS) allows ultra-deep sequencing of nucleic acids. The use of sequence-independent amplification of viral nucleic acids without…”
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Genome Sequences and Characterization of Chicken Astrovirus and Avian Nephritis Virus from Tanzanian Live Bird Markets by Kariithi, Henry M, Volkening, Jeremy D, Chiwanga, Gaspar H, Pantin-Jackwood, Mary J, Msoffe, Peter L M, Suarez, David L

“…The enteric chicken astrovirus (CAstV) and avian nephritis virus (ANV) are the type species of the genus (AAstV; family), capable of causing considerable…”
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Unique Variants of Avian Coronaviruses from Indigenous Chickens in Kenya by Kariithi, Henry M, Volkening, Jeremy D, Goraichuk, Iryna V, Ateya, Leonard O, Williams-Coplin, Dawn, Olivier, Tim L, Binepal, Yatinder S, Afonso, Claudio L, Suarez, David L

“…The avian gamma-coronavirus infectious bronchitis virus (AvCoV, IBV; family) causes upper respiratory disease associated with severe economic losses in the…”
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Rapid virulence prediction and identification of Newcastle disease virus genotypes using third-generation sequencing by Butt, Salman L, Taylor, Tonya L, Volkening, Jeremy D, Dimitrov, Kiril M, Williams-Coplin, Dawn, Lahmers, Kevin K, Miller, Patti J, Rana, Asif M, Suarez, David L, Afonso, Claudio L, Stanton, James B

“…Newcastle disease (ND) outbreaks are global challenges to the poultry industry. Effective management requires rapid identification and virulence prediction of…”
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Detection and Genome Sequence Analysis of Avian Metapneumovirus Subtype A Viruses Circulating in Commercial Chicken Flocks in Mexico by Kariithi, Henry M., Christy, Nancy, Decanini, Eduardo L., Lemiere, Stéphane, Volkening, Jeremy D., Afonso, Claudio L., Suarez, David L.

“…Avian metapneumoviruses (aMPV subtypes A-D) are respiratory and reproductive pathogens of poultry. Since aMPV-A was initially reported in Mexico in 2014, there…”
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Genome Sequence Variations of Infectious Bronchitis Virus Serotypes From Commercial Chickens in Mexico by Kariithi, Henry M., Volkening, Jeremy D., Leyson, Christina M., Afonso, Claudio L., Christy, Nancy, Decanini, Eduardo Lucio, Lemiere, Stéphane, Suarez, David L.

“…New variants of infectious bronchitis viruses (IBVs; Coronaviridae ) continuously emerge despite routine vaccinations. Here, we report genome sequence…”
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Surveillance and Genetic Characterization of Virulent Newcastle Disease Virus Subgenotype V.3 in Indigenous Chickens from Backyard Poultry Farms and Live Bird Markets in Kenya by Kariithi, Henry M, Ferreira, Helena L, Welch, Catharine N, Ateya, Leonard O, Apopo, Auleria A, Zoller, Richard, Volkening, Jeremy D, Williams-Coplin, Dawn, Parris, Darren J, Olivier, Tim L, Goldenberg, Dana, Binepal, Yatinder S, Hernandez, Sonia M, Afonso, Claudio L, Suarez, David L

“…Kenyan poultry consists of ~80% free-range indigenous chickens kept in small flocks (~30 birds) on backyard poultry farms (BPFs) and they are traded via live…”
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Virulent Newcastle disease virus genotypes V.3, VII.2, and XIII.1.1 and their coinfections with infectious bronchitis viruses and other avian pathogens in backyard chickens in Tanzania by Kariithi, Henry M., Volkening, Jeremy D., Chiwanga, Gaspar H., Goraichuk, Iryna V., Olivier, Tim L., Msoffe, Peter L. M., Suarez, David L.

“…Oropharyngeal (OP) and cloacal (CL) swabs from 2049 adult backyard chickens collected at 12 live bird markets, two each in Arusha, Dar es Salaam, Iringa,…”
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Comparable outcomes from long and short read random sequencing of total RNA for detection of pathogens in chicken respiratory samples by Butt, Salman L, Kariithi, Henry M, Volkening, Jeremy D, Taylor, Tonya L, Leyson, Christina, Pantin-Jackwood, Mary, Suarez, David L, Stanton, James B, Afonso, Claudio L

“…Co-infections of avian species with different RNA viruses and pathogenic bacteria are often misdiagnosed or incompletely characterized using targeted…”
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Purification of DNA from the cell-associated herpesvirus Marek's disease virus for 454 pyrosequencing using micrococcal nuclease digestion and polyethylene glycol precipitation by Volkening, Jeremy D., Spatz, Stephen J.

“…Methods for the isolation of DNA from cell-associated herpesviruses have often yielded samples contaminated with host cellular DNA. Because 2nd and 3rd…”
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Proteome-wide Analysis of Protein Thermal Stability in the Model Higher Plant Arabidopsis thaliana[S] by Volkening, Jeremy D., Stecker, Kelly E., Sussman, Michael R.

“…Thermal profiles and melting temperatures have been modeled for over 1700 proteins from the model plant Arabidopsis thaliana using six biological replicates,…”
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Complete Genome Sequence of a Genotype XVII Newcastle Disease Virus, Isolated from an Apparently Healthy Domestic Duck in Nigeria by Shittu, Ismaila, Poonam Sharma, Tony M. Joannis, Jeremy D. Volkening, Georgina N. Odaibo, Daivd O. Olaleye, Dawn Wiliams-Coplin, Ponman Solomon, Celia Abolnik, Patti J. Miller, Kiril M. Dimitrov, Claudio L. Afonso

“…The first complete genome sequence of a strain of Newcastle disease virus (NDV) of genotype XVII is described here. A velogenic strain…”
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Comparative full genome analysis of four infectious laryngotracheitis virus (Gallid herpesvirus-1) virulent isolates from the United States by Spatz, S. J, Volkening, J. D, Keeler, C. L, Kutish, G. F, Riblet, S. M, Boettger, C. M, Clark, K. F, Zsak, L, Afonso, C. L, Mundt, E. S, Rock, D. L, Garcia, M

“…Gallid herpesvirus-1 (GaHV-1), commonly named infectious laryngotracheitis (ILT) virus, causes the respiratory disease in chickens known as ILT. The molecular…”
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Identification and Complete Genome Sequence Analysis of a Genotype XIV Newcastle Disease Virus from Nigeria by Shittu, Ismaila, Poonam Sharma, Jeremy D. Volkening, Ponman Solomon, Lanre K. Sulaiman, Tony M. Joannis, Dawn Williams-Coplin, Patti J. Miller, Kiril M. Dimitrov, Claudio L. Afonso

“…The first complete genome sequence of a strain of Newcastle disease virus (NDV) from genotype XIV is reported here. Strain…”
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