Search Results - "Volke, Daniel C"

Industrial biotechnology of Pseudomonas putida: advances and prospects by Weimer, Anna, Kohlstedt, Michael, Volke, Daniel C., Nikel, Pablo I., Wittmann, Christoph

“…Pseudomonas putida is a Gram-negative, rod-shaped bacterium that can be encountered in diverse ecological habitats. This ubiquity is traced to its remarkably…”
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A fluoride-responsive genetic circuit enables in vivo biofluorination in engineered Pseudomonas putida by Calero, Patricia, Volke, Daniel C., Lowe, Phillip T., Gotfredsen, Charlotte H., O’Hagan, David, Nikel, Pablo I.

“…Fluorine is a key element in the synthesis of molecules broadly used in medicine, agriculture and materials. Addition of fluorine to organic structures…”
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Modular (de)construction of complex bacterial phenotypes by CRISPR/nCas9-assisted, multiplex cytidine base-editing by Volke, Daniel C., Martino, Román A., Kozaeva, Ekaterina, Smania, Andrea M., Nikel, Pablo I.

“…CRISPR/Cas technologies constitute a powerful tool for genome engineering, yet their use in non-traditional bacteria depends on host factors or exogenous…”
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Physical decoupling of XylS/Pm regulatory elements and conditional proteolysis enable precise control of gene expression in Pseudomonas putida by Volke, Daniel C., Turlin, Justine, Mol, Viviënne, Nikel, Pablo I.

“…Summary Most of the gene expression systems available for Gram‐negative bacteria are afflicted by relatively high levels of basal (i.e. leaky) expression of…”
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SEVA 4.0: an update of the Standard European Vector Architecture database for advanced analysis and programming of bacterial phenotypes by Martínez-García, Esteban, Fraile, Sofía, Algar, Elena, Aparicio, Tomás, Velázquez, Elena, Calles, Belén, Tas, Huseyin, Blázquez, Blas, Martín, Bruno, Prieto, Clara, Sánchez-Sampedro, Lucas, Nørholm, Morten H H, Volke, Daniel C, Wirth, Nicolas T, Dvořák, Pavel, Alejaldre, Lorea, Grozinger, Lewis, Crowther, Matthew, Goñi-Moreno, Angel, Nikel, Pablo I, Nogales, Juan, de Lorenzo, Víctor

“…The SEVA platform (https://seva-plasmids.com) was launched one decade ago, both as a database (DB) and as a physical repository of plasmid vectors for genetic…”
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A versatile microbial platform as a tunable whole-cell chemical sensor by Hernández-Sancho, Javier M., Boudigou, Arnaud, Alván-Vargas, Maria V. G., Freund, Dekel, Arnling Bååth, Jenny, Westh, Peter, Jensen, Kenneth, Noda-García, Lianet, Volke, Daniel C., Nikel, Pablo I.

“…Biosensors are used to detect and quantify chemicals produced in industrial microbiology with high specificity, sensitivity, and portability. Most biosensors,…”
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Synthetic control of plasmid replication enables target- and self-curing of vectors and expedites genome engineering of Pseudomonas putida by Volke, Daniel C., Friis, Laura, Wirth, Nicolas T., Turlin, Justine, Nikel, Pablo I.

“…Genome engineering of non-conventional microorganisms calls for the development of dedicated synthetic biology tools. Pseudomonas putida is a Gram-negative,…”
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An expanded CRISPRi toolbox for tunable control of gene expression in Pseudomonas putida by Batianis, Christos, Kozaeva, Ekaterina, Damalas, Stamatios G., Martín‐Pascual, María, Volke, Daniel C., Nikel, Pablo I., Martins dos Santos, Vitor A.P.

“…Summary Owing to its wide metabolic versatility and physiological robustness, together with amenability to genetic manipulations and high resistance to…”
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Non‐invasive, ratiometric determination of intracellular pH in Pseudomonas species using a novel genetically encoded indicator by Arce‐Rodríguez, Alejandro, Volke, Daniel C., Bense, Sarina, Häussler, Susanne, Nikel, Pablo I.

“…Summary The ability of Pseudomonas species to thrive in all major natural environments (i.e. terrestrial, freshwater and marine) is based on its exceptional…”
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Engineering the carbon and redox metabolism of Paenibacillus polymyxa for efficient isobutanol production by Meliawati, Meliawati, Volke, Daniel C., Nikel, Pablo I., Schmid, Jochen

“…Paenibacillus polymyxa is a non‐pathogenic, Gram‐positive bacterium endowed with a rich and versatile metabolism. However interesting, this bacterium has been…”
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Pseudomonas taiwanensis biofilms for continuous conversion of cyclohexanone in drip flow and rotating bed reactors by Heuschkel, Ingeborg, Hanisch, Selina, Volke, Daniel C., Löfgren, Erik, Hoschek, Anna, Nikel, Pablo I., Karande, Rohan, Bühler, Katja

“…In this study, the biocatalytic performance of a Baeyer‐Villiger monooxygenase (BVMO) catalyzing the reaction of cyclohexanone to ε‐caprolactone was…”
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Rapid Genome Engineering of Pseudomonas Assisted by Fluorescent Markers and Tractable Curing of Plasmids by Volke, Daniel C, Wirth, Nicolas T, Nikel, Pablo I

“…Precise genome engineering has become a commonplace technique for metabolic engineering. Also, insertion, deletion and alteration of genes and other functional…”
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Pseudomonas putida by Volke, Daniel C., Calero, Patricia, Nikel, Pablo I.

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Emergent CRISPR–Cas-based technologies for engineering non-model bacteria by Volke, Daniel C., Orsi, Enrico, Nikel, Pablo I.

“…Clustered regularly interspaced short palindromic repeats (CRISPR)–CRISPR-associated proteins (Cas) technologies brought a transformative change in the way…”
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Merging automation and fundamental discovery into the design–build–test–learn cycle of nontraditional microbes by Gurdo, Nicolás, Volke, Daniel C., Nikel, Pablo I.

“…Major advances toward a bio-based industry enabled cost-efficient bioproduction of multiple chemicals, yet successful industrial processes are relatively…”
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Automating the design-build-test-learn cycle towards next-generation bacterial cell factories by Gurdo, Nicolás, Volke, Daniel C., McCloskey, Douglas, Nikel, Pablo Iván

“…Automation is playing an increasingly significant role in synthetic biology. Groundbreaking technologies, developed over the past 20 years, have enormously…”
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Negative regulation of plastidial isoprenoid pathway by herbivore-induced β-cyclocitral in Arabidopsis thaliana by Mitra, Sirsha, Estrada-Tejedor, Roger, Volke, Daniel C., Phillips, Michael A., Gershenzon, Jonathan, Wright, Louwrance P.

“…Insect damage to plants is known to up-regulate defense and down-regulate growth processes. While there are frequent reports about up-regulation of defense…”
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Time-resolved, deuterium-based fluxomics uncovers the hierarchy and dynamics of sugar processing by Pseudomonas putida by Volke, Daniel C., Gurdo, Nicolas, Milanesi, Riccardo, Nikel, Pablo I.

“…Pseudomonas putida, a microbial host widely adopted for metabolic engineering, processes glucose through convergent peripheral pathways that ultimately yield…”
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A Nonconventional Archaeal Fluorinase Identified by In Silico Mining for Enhanced Fluorine Biocatalysis by Pardo, Isabel, Bednar, David, Calero, Patricia, Volke, Daniel C., Damborský, Jiří, Nikel, Pablo I.

“…Fluorinases, the only enzymes known to catalyze the transfer of fluorine to an organic molecule, are essential catalysts for the biological synthesis of…”
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Engineering of Pseudomonas putida for accelerated co-utilization of glucose and cellobiose yields aerobic overproduction of pyruvate explained by an upgraded metabolic model by Bujdoš, Dalimil, Popelářová, Barbora, Volke, Daniel C., Nikel, Pablo I., Sonnenschein, Nikolaus, Dvořák, Pavel

“…Pseudomonas putida KT2440 is an attractive bacterial host for biotechnological production of valuable chemicals from renewable lignocellulosic feedstocks as it…”
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