Search Results - "Vogtmann, Emily"

DNA extraction for human microbiome studies: the issue of standardization by Greathouse, K Leigh, Sinha, Rashmi, Vogtmann, Emily

“…Among the laboratory and bioinformatic processing steps for human microbiome studies, a lack of consistency in DNA extraction methodologies is hindering the…”
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Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium by Sinha, Rashmi, Abu-Ali, Galeb, Vogtmann, Emily, Fodor, Anthony A, Ren, Boyu, Amir, Amnon, Schwager, Emma, Crabtree, Jonathan, Ma, Siyuan, Abnet, Christian C, Knight, Rob, White, Owen, Huttenhower, Curtis

“…The Microbiome Quality Control project consortium reports outcomes of a baseline study (MBQC) that will guide future improvements in reproducibility of…”
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Microbial characterization of esophageal squamous cell carcinoma and gastric cardia adenocarcinoma from a high‐risk region of China by Shao, Dantong, Vogtmann, Emily, Liu, Anqi, Qin, Junjie, Chen, Wen, Abnet, Christian C., Wei, Wenqiang

“…Background Little is known about the microbiota and upper gastrointestinal tumors. Esophageal squamous cell carcinoma (ESCC) and gastric cardia adenocarcinoma…”
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Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer by Wirbel, Jakob, Pyl, Paul Theodor, Kartal, Ece, Zych, Konrad, Kashani, Alireza, Milanese, Alessio, Fleck, Jonas S., Voigt, Anita Y., Palleja, Albert, Ponnudurai, Ruby, Sunagawa, Shinichi, Coelho, Luis Pedro, Schrotz-King, Petra, Vogtmann, Emily, Habermann, Nina, Niméus, Emma, Thomas, Andrew M., Manghi, Paolo, Gandini, Sara, Serrano, Davide, Mizutani, Sayaka, Shiroma, Hirotsugu, Shiba, Satoshi, Shibata, Tatsuhiro, Yachida, Shinichi, Yamada, Takuji, Waldron, Levi, Naccarati, Alessio, Segata, Nicola, Sinha, Rashmi, Ulrich, Cornelia M., Brenner, Hermann, Arumugam, Manimozhiyan, Bork, Peer, Zeller, Georg

“…Association studies have linked microbiome alterations with many human diseases. However, they have not always reported consistent results, thereby…”
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Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing by Vogtmann, Emily, Hua, Xing, Zeller, Georg, Sunagawa, Shinichi, Voigt, Anita Y, Hercog, Rajna, Goedert, James J, Shi, Jianxin, Bork, Peer, Sinha, Rashmi

“…Accumulating evidence indicates that the gut microbiota affects colorectal cancer development, but previous studies have varied in population, technical…”
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Elucidating the role of the gastrointestinal microbiota in racial and ethnic health disparities by Byrd, Doratha A., Carson, Tiffany L., Williams, Faustine, Vogtmann, Emily

“…Genetics and the microbiota Although it is well known that race and ethnicity are poor proxies for genetic ancestry, these factors may be somewhat correlated…”
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Fecal Metabolomic Signatures in Colorectal Adenoma Patients Are Associated with Gut Microbiota and Early Events of Colorectal Cancer Pathogenesis by Kim, Minsuk, Vogtmann, Emily, Ahlquist, David A, Devens, Mary E, Kisiel, John B, Taylor, William R, White, Bryan A, Hale, Vanessa L, Sung, Jaeyun, Chia, Nicholas, Sinha, Rashmi, Chen, Jun

“…Colorectal adenomas are precancerous lesions of colorectal cancer (CRC) that offer a means of viewing the events key to early CRC development. A number of…”
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Markers of metabolic health and gut microbiome diversity: findings from two population-based cohort studies by Zouiouich, Semi, Loftfield, Erikka, Huybrechts, Inge, Viallon, Vivian, Louca, Panayiotis, Vogtmann, Emily, Wells, Philippa M., Steves, Claire J., Herzig, Karl-Heinz, Menni, Cristina, Jarvelin, Marjo-Riitta, Sinha, Rashmi, Gunter, Marc J.

“…Aims/hypothesis The gut microbiome is hypothesised to be related to insulin resistance and other metabolic variables. However, data from population-based…”
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Coffee Drinking Is Widespread in the United States, but Usual Intake Varies by Key Demographic and Lifestyle Factors by Loftfield, Erikka, Freedman, Neal D, Dodd, Kevin W, Vogtmann, Emily, Xiao, Qian, Sinha, Rashmi, Graubard, Barry I

“…Despite widespread popularity and possible health effects, the prevalence and distribution of coffee consumption in US adults are poorly characterized. We…”
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The Time-Dependent Association Between Irritable Bowel Syndrome and All-Cause and Cause-Specific Mortality: A Prospective Cohort Study Within the UK Biobank by Li, Fangyu, Yano, Yukiko, Étiévant, Lola, Daniel, Carrie R, Sharma, Shreela V, Brown, Eric L, Li, Ruosha, Loftfield, Erikka, Lan, Qing, Sinha, Rashmi, Moshiree, Baharak, Inoue-Choi, Maki, Vogtmann, Emily

“…Irritable bowel syndrome (IBS) is one of the most common functional gastrointestinal disorders, but few studies have evaluated mortality risks among…”
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The Oral Microbiome and Lung Cancer Risk: An Analysis of 3 Prospective Cohort Studies by Vogtmann, Emily, Hua, Xing, Yu, Guoqin, Purandare, Vaishnavi, Hullings, Autumn G, Shao, Dantong, Wan, Yunhu, Li, Shilan, Dagnall, Casey L, Jones, Kristine, Hicks, Belynda D, Hutchinson, Amy, Caporaso, J Gregory, Wheeler, William, Sandler, Dale P, Beane Freeman, Laura E, Liao, Linda M, Huang, Wen-Yi, Freedman, Neal D, Caporaso, Neil E, Sinha, Rashmi, Gail, Mitchell H, Shi, Jianxin, Abnet, Christian C

“…Previous studies suggested associations between the oral microbiome and lung cancer, but studies were predominantly cross-sectional and underpowered. Using a…”
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Tobacco Product Use Patterns, and Nicotine and Tobacco-Specific Nitrosamine Exposure: NHANES 1999-2012 by Choi, Kelvin, Sabado, Melanie, El-Toukhy, Sherine, Vogtmann, Emily, Freedman, Neal D, Hatsukami, Dorothy

“…Few studies have examined differences in product consumption patterns and nicotine and tobacco-specific nitrosamines (TSNA) exposure between single versus…”
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Sleep characteristics, light at night and breast cancer risk in a prospective cohort by White, Alexandra J., Weinberg, Clarice R., Park, Yong‐Moon, D'Aloisio, Aimee A., Vogtmann, Emily, Nichols, Hazel B., Sandler, Dale P.

“…Increasing numbers of women in the US are getting too little sleep. Inadequate sleep has been associated with impaired metabolic function and endocrine…”
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Tooth count, untreated caries and mortality in US adults: a population-based cohort study by Liu, Jie, Zong, Xiaoyu, Vogtmann, Emily, Cao, Chao, James, Aimee S, Chan, Andrew T, Rimm, Eric B, Hayes, Richard B, Colditz, Graham A, Michaud, Dominique S, Joshipura, Kaumudi J, Abnet, Christian C, Cao, Yin

“…Abstract Background The link between oral diseases and mortality remains under-explored. We aimed to evaluate the associations between tooth count, untreated…”
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Dental health and lung cancer risk in the Golestan Cohort Study by Yano, Yukiko, Abnet, Christian C, Roshandel, Gholamreza, Graf, Akua, Poustchi, Hossein, Khoshnia, Masoud, Pourshams, Akram, Kamangar, Farin, Boffetta, Paolo, Brennan, Paul, Dawsey, Sanford M, Vogtmann, Emily, Malekzadeh, Reza, Etemadi, Arash

“…Poor oral health has been linked to various systemic diseases, including multiple cancer types, but studies of its association with lung cancer have been…”
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Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations by Byrd, Doratha A, Chen, Jun, Vogtmann, Emily, Hullings, Autumn, Song, Se Jin, Amir, Amnon, Kibriya, Muhammad G, Ahsan, Habibul, Chen, Yu, Nelson, Heidi, Knight, Rob, Shi, Jianxin, Chia, Nicholas, Sinha, Rashmi

“…The gut microbiome likely plays a role in the etiology of multiple health conditions, especially those affecting the gastrointestinal tract. Little consensus…”
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Temporal Variability of Oral Microbiota over 10 Months and the Implications for Future Epidemiologic Studies by Vogtmann, Emily, Hua, Xing, Zhou, Liang, Wan, Yunhu, Suman, Shalabh, Zhu, Bin, Dagnall, Casey L, Hutchinson, Amy, Jones, Kristine, Hicks, Belynda D, Sinha, Rashmi, Shi, Jianxin, Abnet, Christian C

“…Few studies have prospectively evaluated the association between oral microbiota and health outcomes. Precise estimates of the intrasubject microbial metric…”
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Association between sleep and breast cancer incidence among postmenopausal women in the Women's Health Initiative by Vogtmann, Emily, Levitan, Emily B, Hale, Lauren, Shikany, James M, Shah, Neomi A, Endeshaw, Yohannes, Lewis, Cora E, Manson, Joann E, Chlebowski, Rowan T

“…To determine whether the duration of sleep, sleep quality, insomnia, or sleep disturbance was associated with incident breast cancer in the Women's Health…”
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Comparison of Oral Collection Methods for Studies of Microbiota by Vogtmann, Emily, Chen, Jun, Kibriya, Muhammad G, Amir, Amnon, Shi, Jianxin, Chen, Yu, Islam, Tariqul, Eunes, Mahbubul, Ahmed, Alauddin, Naher, Jabun, Rahman, Anisur, Barmon, Bhaswati, Knight, Rob, Chia, Nicholas, Ahsan, Habibul, Abnet, Christian C, Sinha, Rashmi

“…A number of cohort studies have collected Scope mouthwash samples by mail, which are being used for microbiota measurements. We evaluated the stability of…”
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Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing by Byrd, Doratha A, Sinha, Rashmi, Hoffman, Kristi L, Chen, Jun, Hua, Xing, Shi, Jianxin, Chia, Nicholas, Petrosino, Joseph, Vogtmann, Emily

“…Few previous studies have assessed stability and "gold-standard" concordance of fecal sample collection methods for whole-genome shotgun metagenomic sequencing…”
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