Search Results - "Vogt, Lars"

FAIR data representation in times of eScience: a comparison of instance-based and class-based semantic representations of empirical data using phenotype descriptions as example by Vogt, Lars

“…The size, velocity, and heterogeneity of Big Data outclasses conventional data management tools and requires data and metadata to be fully machine-actionable…”
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Levels and building blocks-toward a domain granularity framework for the life sciences by Vogt, Lars

“…With the emergence of high-throughput technologies, Big Data and eScience, the use of online data repositories and the establishment of new data standards that…”
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Organizing phenotypic data-a semantic data model for anatomy by Vogt, Lars

“…Currently, almost all morphological data are published as unstructured free text descriptions. This not only brings about terminological problems regarding…”
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Spatio-structural granularity of biological material entities by Vogt, Lars

“…With the continuously increasing demands on knowledge- and data-management that databases have to meet, ontologies and the theories of granularity they use…”
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Semantic units: organizing knowledge graphs into semantically meaningful units of representation by Lars, Vogt, Tobias, Kuhn, Robert, Hoehndorf

“…In today's landscape of data management, the importance of knowledge graphs and ontologies is escalating as critical mechanisms aligned with the FAIR Guiding…”
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Correction to: Semantic units: organizing knowledge graphs into semantically meaningful units of representation by Vogt, Lars, Kuhn, Tobias, Hoehndorf, Robert

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Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research by Vogt, Lars, Mikó, István, Bartolomaeus, Thomas

“…In times of exponential data growth in the life sciences, machine-supported approaches are becoming increasingly important and with them the need for FAIR…”
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Treatment effect of mTOR-inhibition on tissue composition of renal angiomyolipomas in tuberous sclerosis complex (TSC) by Brakemeier, Susanne, Vogt, Lars, Adams, Lisa, Zukunft, Bianca, Diederichs, Gerd, Hamm, Bernd, Budde, Klemens, Makowski, Marcus R

“…Tuberous sclerosis complex (TSC)-associated renal angiomyolipoma (AML) have a high lifetime risk of acute bleeding. MTOR-inhibitors are a promising novel…”
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Fiat or bona fide boundary--a matter of granular perspective by Vogt, Lars, Grobe, Peter, Quast, Björn, Bartolomaeus, Thomas

“…Distinguishing bona fide (i.e. natural) and fiat (i.e. artificial) physical boundaries plays a key role for distinguishing natural from artificial material…”
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Transforming the study of organisms: Phenomic data models and knowledge bases by Thessen, Anne E, Walls, Ramona L, Vogt, Lars, Singer, Jessica, Warren, Robert, Buttigieg, Pier Luigi, Balhoff, James P, Mungall, Christopher J, McGuinness, Deborah L, Stucky, Brian J, Yoder, Matthew J, Haendel, Melissa A

“…The rapidly decreasing cost of gene sequencing has resulted in a deluge of genomic data from across the tree of life; however, outside a few model organism…”
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ORKG: Facilitating the Transfer of Research Results with the Open Research Knowledge Graph by Auer, Sören, Stocker, Markus, Vogt, Lars, Fraumann, Grischa, Garatzogianni, Alexandra

“…This document is an edited version of the original funding proposal entitled 'ORKG: Facilitating the Transfer of Research Results with the Open Research…”
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Accommodating ontologies to biological reality--top-level categories of cumulative-constitutively organized material entities by Vogt, Lars, Grobe, Peter, Quast, Björn, Bartolomaeus, Thomas

“…The Basic Formal Ontology (BFO) is a top-level formal foundational ontology for the biomedical domain. It has been developed with the purpose to serve as an…”
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Top-level categories of constitutively organized material entities--suggestions for a formal top-level ontology by Vogt, Lars, Grobe, Peter, Quast, Björn, Bartolomaeus, Thomas

“…Application oriented ontologies are important for reliably communicating and managing data in databases. Unfortunately, they often differ in the definitions…”
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Building an atlas of knowledge for invasion biology and beyond! 2nd enKORE-INAS Workshop by Bernard-Verdier, Maud, Heger, Tina, Mietchen, Daniel, Musseau, Camille, Brinner, Marc, Hillig, Alexander, Kraker, Peter, Lokatis, Sophie, Nunes, Ana Luisa, Scheidweiler, Nils, Stocker, Markus, Vial, Roxane, Vogt, Lars, Bacher, Sven, Baklouti, Eya, Gupta, Harsh Bardhan, Beisel, Jean-Nicolas, Bertolino, Sandro, Briski, Elizabeta, Castellanos-Galindo, Gustavo, Courchamp, Franck, Daly, Ella, Dawson, Wayne, Dickey, James, Evans, Thomas, Itescu, Yuval, Koenig-Ries, Birgitta, Kumar, Lohith, Kumschick, Sabrina, Meyerson, Laura, Pattison, Zarah, Pfadenhauer, William, Renault, David, Rickowski, Fiona, Ruland, Florian, Schittko, Conrad, Straka, Tanja, Yannelli, Florencia, Jeschke, Jonathan

“…With the exponential increase in scientific publications, new conceptual and technological tools are needed to help scientists, students, managers and…”
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Assessing similarity: on homology, characters and the need for a semantic approach to non‐evolutionary comparative homology by Vogt, Lars

“…The problem of homology has been a consistent source of controversy at the heart of systematic biology, as has the step of morphological character analysis in…”
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SKG4EOSC - Scholarly Knowledge Graphs for EOSC: Establishing a backbone of knowledge graphs for FAIR Scholarly Information in EOSC by Stocker, Markus, Heger, Tina, Schweidtmann, Artur, Ćwiek-Kupczyńska, Hanna, Penev, Lyubomir, Dojchinovski, Milan, Willighagen, Egon, Vidal, Maria-Esther, Turki, Houcemeddine, Balliet, Daniel, Tiddi, Ilaria, Kuhn, Tobias, Mietchen, Daniel, Karras, Oliver, Vogt, Lars, Hellmann, Sebastian, Jeschke, Jonathan, Krajewski, Paweł, Auer, Sören

“…In the age of advanced information systems powering fast-paced knowledge economies that face global societal challenges, it is no longer adequate to express…”
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Towards a semantic approach to numerical tree inference in phylogenetics by Vogt, Lars

“…Conventional approaches to phylogeny reconstruction require a character analysis step prior to and methodologically separated from a numerical tree inference…”
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The logical basis for coding ontologically dependent characters by Vogt, Lars

“…The coding of dependent morphological characters represents a major methodological problem in phylogenetics. Based on a distinction of semantic and ontological…”
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Invertebrate neurophylogeny: suggested terms and definitions for a neuroanatomical glossary by Richter, Stefan, Loesel, Rudi, Purschke, Günter, Schmidt-Rhaesa, Andreas, Scholtz, Gerhard, Stach, Thomas, Vogt, Lars, Wanninger, Andreas, Brenneis, Georg, Döring, Carmen, Faller, Simone, Fritsch, Martin, Grobe, Peter, Heuer, Carsten M, Kaul, Sabrina, Møller, Ole S, Müller, Carsten Hg, Rieger, Verena, Rothe, Birgen H, Stegner, Martin Ej, Harzsch, Steffen

“…Invertebrate nervous systems are highly disparate between different taxa. This is reflected in the terminology used to describe them, which is very rich and…”
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Emerging semantics to link phenotype and environment by Thessen, Anne E, Bunker, Daniel E, Buttigieg, Pier Luigi, Cooper, Laurel D, Dahdul, Wasila M, Domisch, Sami, Franz, Nico M, Jaiswal, Pankaj, Lawrence-Dill, Carolyn J, Midford, Peter E, Mungall, Christopher J, Ramírez, Martín J, Specht, Chelsea D, Vogt, Lars, Vos, Rutger Aldo, Walls, Ramona L, White, Jeffrey W, Zhang, Guanyang, Deans, Andrew R, Huala, Eva, Lewis, Suzanna E, Mabee, Paula M

“…Understanding the interplay between environmental conditions and phenotypes is a fundamental goal of biology. Unfortunately, data that include observations on…”
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