Search Results - "Vlaskina, Anna V."

Blue-to-Red TagFT, mTagFT, mTsFT, and Green-to-FarRed mNeptusFT2 Proteins, Genetically Encoded True and Tandem Fluorescent Timers by Subach, Oksana M, Vlaskina, Anna V, Agapova, Yulia K, Nikolaeva, Alena Y, Anokhin, Konstantin V, Piatkevich, Kiryl D, Patrushev, Maxim V, Boyko, Konstantin M, Subach, Fedor V

“…True genetically encoded monomeric fluorescent timers (tFTs) change their fluorescent color as a result of the complete transition of the blue form into the…”
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Novel Genetically Encoded Bright Positive Calcium Indicator NCaMP7 Based on the mNeonGreen Fluorescent Protein by Subach, Oksana M, Sotskov, Vladimir P, Plusnin, Viktor V, Gruzdeva, Anna M, Barykina, Natalia V, Ivashkina, Olga I, Anokhin, Konstantin V, Nikolaeva, Alena Y, Korzhenevskiy, Dmitry A, Vlaskina, Anna V, Lazarenko, Vladimir A, Boyko, Konstantin M, Rakitina, Tatiana V, Varizhuk, Anna M, Pozmogova, Galina E, Podgorny, Oleg V, Piatkevich, Kiryl D, Boyden, Edward S, Subach, Fedor V

“…Green fluorescent genetically encoded calcium indicators (GECIs) are the most popular tool for visualization of calcium dynamics in vivo. However, most of them…”
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LSSmScarlet2 and LSSmScarlet3, Chemically Stable Genetically Encoded Red Fluorescent Proteins with a Large Stokes’ Shift by Subach, Oksana M., Vlaskina, Anna V., Agapova, Yulia K., Piatkevich, Kiryl D., Patrushev, Maxim V., Samygina, Valeriya R., Subach, Fedor V.

“…Red fluorescent proteins with a large Stokes’ shift (LSSRFPs) are genetically encoded and efficiently excited by 488 nm light, allowing simultaneous dual-color…”
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Combined Structural and Computational Study of the mRubyFT Fluorescent Timer Locked in Its Blue Form by Boyko, Konstantin M, Khrenova, Maria G, Nikolaeva, Alena Y, Dorovatovskii, Pavel V, Vlaskina, Anna V, Subach, Oksana M, Popov, Vladimir O, Subach, Fedor V

“…The mRubyFT is a monomeric genetically encoded fluorescent timer based on the mRuby2 fluorescent protein, which is characterized by the complete maturation of…”
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LSSmScarlet, dCyRFP2s, dCyOFP2s and CRISPRed2s, Genetically Encoded Red Fluorescent Proteins with a Large Stokes Shift by Subach, Oksana M, Vlaskina, Anna V, Agapova, Yuliya K, Dorovatovskii, Pavel V, Nikolaeva, Alena Y, Ivashkina, Olga I, Popov, Vladimir O, Piatkevich, Kiryl D, Khrenova, Maria G, Smirnova, Tatiana A, Boyko, Konstantin M, Subach, Fedor V

“…Genetically encoded red fluorescent proteins with a large Stokes shift (LSSRFPs) can be efficiently co-excited with common green FPs both under single- and…”
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cNTnC and fYTnC2, Genetically Encoded Green Calcium Indicators Based on Troponin C from Fast Animals by Subach, Oksana M, Vlaskina, Anna V, Agapova, Yuliya K, Korzhenevskiy, Dmitriy A, Nikolaeva, Alena Y, Varizhuk, Anna M, Subach, Maksim F, Patrushev, Maxim V, Piatkevich, Kiryl D, Boyko, Konstantin M, Subach, Fedor V

“…NTnC-like green fluorescent genetically encoded calcium indicators (GECIs) with two calcium ion binding sites were constructed using the insertion of truncated…”
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FRCaMP, a Red Fluorescent Genetically Encoded Calcium Indicator Based on Calmodulin from Schizosaccharomyces Pombe Fungus by Subach, Oksana M, Barykina, Natalia V, Chefanova, Elizaveta S, Vlaskina, Anna V, Sotskov, Vladimir P, Ivashkina, Olga I, Anokhin, Konstantin V, Subach, Fedor V

“…Red fluorescent genetically encoded calcium indicators (GECIs) have expanded the available pallet of colors used for the visualization of neuronal calcium…”
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FGCaMP7, an Improved Version of Fungi-Based Ratiometric Calcium Indicator for In Vivo Visualization of Neuronal Activity by Barykina, Natalia V, Sotskov, Vladimir P, Gruzdeva, Anna M, Wu, You Kure, Portugues, Ruben, Subach, Oksana M, Chefanova, Elizaveta S, Plusnin, Viktor V, Ivashkina, Olga I, Anokhin, Konstantin V, Vlaskina, Anna V, Korzhenevskiy, Dmitry A, Nikolaeva, Alena Y, Boyko, Konstantin M, Rakitina, Tatiana V, Varizhuk, Anna M, Pozmogova, Galina E, Subach, Fedor V

“…Genetically encoded calcium indicators (GECIs) have become a widespread tool for the visualization of neuronal activity. As compared to popular GCaMP GECIs,…”
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The mRubyFT Protein, Genetically Encoded Blue-to-Red Fluorescent Timer by Subach, Oksana M, Tashkeev, Aleksandr, Vlaskina, Anna V, Petrenko, Dmitry E, Gaivoronskii, Filipp A, Nikolaeva, Alena Y, Ivashkina, Olga I, Anokhin, Konstantin V, Popov, Vladimir O, Boyko, Konstantin M, Subach, Fedor V

“…Genetically encoded monomeric blue-to-red fluorescent timers (mFTs) change their fluorescent color over time. mCherry-derived mFTs were used for the tracking…”
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Self-Assembly and Conformational Change in the Oligomeric Structure of the Ectodomain of the TBEV E Protein Studied via X-ray, Small-Angle X-ray Scattering, and Molecular Dynamics by Konarev, Petr V, Vlaskina, Anna V, Korzhenevskiy, Dmitry, Rakitina, Tatiana V, Petrenko, Dmitry, Agapova, Yulia, Kordonskaya, Yulia, Samygina, Valeriya R

“…The determination of the three-dimensional structures of viral proteins is a necessary step both for understanding the mechanisms of virus pathogenicity and…”
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YTnC2 , an improved genetically encoded green calcium indicator based on toadfish troponin C by Subach, Oksana M., Vlaskina, Anna V., Agapova, Yulia K., Nikolaeva, Alena Y., Varizhuk, Anna M., Podgorny, Oleg V., Piatkevich, Kiryl D., Patrushev, Maxim V., Boyko, Konstantin M., Subach, Fedor V.

“…Genetically encoded calcium indicators based on truncated troponin C are attractive probes for calcium imaging due to their relatively small molecular size and…”
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First Crystal Structure of Bacterial Oligopeptidase B in an Intermediate State: The Roles of the Hinge Region Modification and Spermine by Petrenko, Dmitry E., Timofeev, Vladimir I., Britikov, Vladimir V., Britikova, Elena V., Kleymenov, Sergey Y., Vlaskina, Anna V., Kuranova, Inna P., Mikhailova, Anna G., Rakitina, Tatiana V.

“…Oligopeptidase B (OpB) is a two-domain, trypsin-like serine peptidase belonging to the S9 prolyloligopeptidase (POP) family. Two domains are linked by a hinge…”
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An Algorithm for the Development of a Recombinant Antiherpetic Subunit Vaccine Combining the Crystal Structure Analysis, AlphaFold2-Based Modeling, and Immunoinformatics by Rakitina, Tatiana V, Smirnova, Evgeniya V, Podshivalov, David D, Timofeev, Vladimir I, Komolov, Aleksandr S, Vlaskina, Anna V, Gaeva, Tatiana N, Vasilov, Raif G, Dyakova, Yulia A, Kovalchuk, Mikhail V

“…Using the envelope glycoprotein B (gB) crystal structure and digital prediction algorithm, the B- and T-cell antigenic determinants (epitopes) of human…”
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Elucidation of the Conformational Transition of Oligopeptidase B by an Integrative Approach Based on the Combination of X-ray, SAXS, and Essential Dynamics Sampling Simulation by Britikov, Vladimir, Timofeev, Vladimir, Petrenko, Dmitry, Britikova, Elena, Nikolaeva, Alena, Vlaskina, Anna, Boyko, Konstantin, Mikhailova, Anna, Rakitina, Tatiana

“…Oligopeptidase B (OPB) is the least studied group from the prolyl oligopeptidase family. OPBs are found in bacteria and parasitic protozoa and represent…”
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The Crystal Structure of Nα-p-tosyl-lysyl Chloromethylketone-Bound Oligopeptidase B from Serratia Proteamaculans Revealed a New Type of Inhibitor Binding by Timofeev, Vladimir, Petrenko, Dmitry, Agapova, Yulia, Vlaskina, Anna, Karlinsky, David, Mikhailova, Anna, Kuranova, Inna, Rakitina, Tatiana

“…A covalent serine protease inhibitor—Na-p-Tosyl-Lysyl Chloromethylketone (TCK) is a modified lysine residue tosylated at the N-terminus and chloromethylated at…”
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Bright and stable monomeric green fluorescent protein derived from StayGold by Zhang, Hanbin, Lesnov, Gleb D., Subach, Oksana M., Zhang, Wenhao, Kuzmicheva, Tatyana P., Vlaskina, Anna V., Samygina, Valeriya R., Chen, Liangyi, Ye, Xianxin, Nikolaeva, Alena Yu, Gabdulkhakov, Azat, Papadaki, Stavrini, Qin, Wenming, Borshchevskiy, Valentin, Perfilov, Maxim M., Gavrikov, Alexey S., Drobizhev, Mikhail, Mishin, Alexander S., Piatkevich, Kiryl D., Subach, Fedor V.

“…The high brightness and photostability of the green fluorescent protein StayGold make it a particularly attractive probe for long-term live-cell imaging;…”
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FNCaMP, ratiometric green calcium indicator based on mNeonGreen protein by Subach, Oksana M., Varfolomeeva, Larisa, Vlaskina, Anna V., Agapova, Yulia K., Nikolaeva, Alena Y., Piatkevich, Kiryl D., Patrushev, Maxim V., Boyko, Konstantin M., Subach, Fedor V.

“…Neurobiologists widely use green genetically encoded calcium indicators (GECIs) for visualization of neuronal activity. Among them, ratiometric GECIs allow…”
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Structure-based inhibitors targeting the alpha-helical domain of the Spiroplasma melliferum histone-like HU protein by Agapova, Yuliya K., Altukhov, Dmitry A., Timofeev, Vladimir I., Stroylov, Victor S., Mityanov, Vitaly S., Korzhenevskiy, Dmitry A., Vlaskina, Anna V., Smirnova, Eugenia V., Bocharov, Eduard V., Rakitina, Tatiana V.

“…Here we report bisphenol derivatives of fluorene (BDFs) as a new type of chemical probes targeting a histone-like HU protein, a global regulator of bacterial…”
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Activity modulation of the oligopeptidase B from Serratia proteamaculans by site-directed mutagenesis of amino acid residues surrounding catalytic triad histidine by Mikhailova, Anna G., Rakitina, Tatiana V., Timofeev, Vladimir I., Karlinsky, David M., Korzhenevskiy, Dmitry A., Agapova, Yulia К., Vlaskina, Anna V., Ovchinnikova, Marina V., Gorlenko, Valentina A., Rumsh, Lev D.

“…Oligopeptidase B (OpdB; EC 3.4.21.83) is a trypsin-like peptidase belonging to the family of serine prolyl oligopeptidases; two-domain structure of the enzyme…”
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Structural basis of the high thermal stability of the histone-like HU protein from the mollicute Spiroplasma melliferum KC3 by Boyko, Konstantin M., Rakitina, Tatiana V., Korzhenevskiy, Dmitry A., Vlaskina, Anna V., Agapova, Yuliya K., Kamashev, Dmitry E., Kleymenov, Sergey Y., Popov, Vladimir O.

“…The three-dimensional structure of the histone-like HU protein from the mycoplasma Spiroplasma melliferum KC3 (HUSpm) was determined at 1.4 Å resolution, and…”
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