Search Results - "Vivien, Régis"
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Toxicity of sediments in eight urban stormwater management ponds: bioassessment by oligochaete community metrics used in the sediment quality triad
Published in Water science and technology (01-03-2023)“…Implemented for decades as part of the 'best management practices (BMPs)' for controlling urban runoff impacts on receiving waters, stormwater management ponds…”
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The Genus Chaetogaster Baer, 1827 (Annelida, Clitellata) in Switzerland: A First Step toward Cataloguing Its Molecular Diversity and Description of New Species on a DNA Sequence Basis
Published in Biology (Basel, Switzerland) (04-09-2024)“…The genus belongs to the subfamily Naidinae (Naididae); it includes mostly species of small size and is diverse and abundant in surface coarse sediments in…”
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Assessment of the effects of wastewater treatment plant effluents on receiving streams using oligochaete communities of the porous matrix
Published in Knowledge and management of aquatic ecosystems (2019)“…Human activities can disturb the natural dynamics of exchanges between surface water and groundwater in rivers. Such exchanges contribute to the…”
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Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program
Published in Environmental science and pollution research international (01-12-2018)“…The effectiveness of environmental protection measures is based on the early identification and diagnosis of anthropogenic pressures. Similarly, restoration…”
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Cytochrome c oxidase barcodes for aquatic oligochaete identification: development of a Swiss reference database
Published in PeerJ (San Francisco, CA) (06-12-2017)“…Aquatic oligochaetes represent valuable indicators of the quality of sediments of watercourses and lakes, but their difficult identification based on…”
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The Foreign Oligochaete Species Quistadrilus multisetosus (Smith, 1900) in Lake Geneva: Morphological and Molecular Characterization and Environmental Influences on Its Distribution
Published in Biology (Basel, Switzerland) (01-12-2020)“…The presence of the oligochaete species (Smith, 1900) originating from North America has been mentioned for several decades in Europe, the Middle East and…”
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Metadata standards and practical guidelines for specimen and DNA curation when building barcode reference libraries for aquatic life
Published in Metabarcoding and Metagenomics (26-02-2021)“…DNA barcoding and metabarcoding is increasingly used to effectively and precisely assess and monitor biodiversity in aquatic ecosystems. As these methods rely…”
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Erratum: Vivien, R.; Casado-Martínez, C.; Lafont, M.; Ferrari, B.J. Effect Thresholds of Metals in Stream Sediments Based on In Situ Oligochaete Communities. Environments 2020, 7, 31
Published in Environments (Basel, Switzerland) (29-06-2020)“…The authors would like to correct the published article [...]…”
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Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities
Published in PloS one (11-02-2016)“…Aquatic oligochaetes are a common group of freshwater benthic invertebrates known to be very sensitive to environmental changes and currently used as…”
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Molecular barcoding of aquatic oligochaetes: implications for biomonitoring
Published in PloS one (09-04-2015)“…Aquatic oligochaetes are well recognized bioindicators of quality of sediments and water in watercourses and lakes. However, the difficult taxonomic…”
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High-throughput DNA barcoding of oligochaetes for abundance-based indices to assess the biological quality of sediments in streams and lakes
Published in Scientific reports (06-02-2020)“…Aquatic oligochaete communities are valuable indicators of the biological quality of sediments in streams and lakes, but identification of specimens to the…”
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Testing different (e)DNA metabarcoding approaches to assess aquatic oligochaete diversity and the biological quality of sediments
Published in Ecological indicators (01-11-2019)“…•We applied the classical oligochaete index and COI based metabarcoding approaches.•We analysed DNA extracted from environmental samples and pools of…”
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Simultaneous preservation of the DNA quality, the community composition and the density of freshwater oligochaetes for the development of genetically based biological indices
Published in PeerJ (San Francisco, CA) (05-12-2018)“…Oligochaetes are recognized as valuable bioindicators of sediment quality in streams and lakes. The development of an oligochaete index based on the…”
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Use of oligochaete communities for assessing the quality of sediments in watercourses of the Geneva area (Switzerland) and Artois-Picardie basin (France): proposition of heavy metal toxicity thresholds
Published in Ecohydrology & Hydrobiology (2014)“…The aim of the study was to validate biological tools based on the analysis of sediment-dwelling oligochaete assemblages for assessing the biological quality…”
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Effect Thresholds of Metals in Stream Sediments Based on In Situ Oligochaete Communities
Published in Environments (Basel, Switzerland) (01-04-2020)“…Aquatic oligochaetes, comprising a large number of species showing various degrees of resistance to chemical pollution, are recognized as valuable…”
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DNA barcoding of formalin-fixed aquatic oligochaetes for biomonitoring
Published in BMC research notes (13-07-2016)“…Oligochaetes are valuable bioindicators of the quality of watercourse and lake sediments. The morphological identification of aquatic oligochaetes is…”
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Next-Generation Sequencing of Aquatic Oligochaetes: Comparison of Experimental Communities: e0148644
Published in PloS one (01-02-2016)“…Aquatic oligochaetes are a common group of freshwater benthic invertebrates known to be very sensitive to environmental changes and currently used as…”
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Do results of the T-SPOT.TB interferon-γ release assay change after treatment of tuberculosis?
Published in Respiratory medicine (2009)“…Interferon-gamma (IFN-gamma) production by lymphocytes exposed to antigens specific of Mycobacterium tuberculosis has been shown to correlate with antigen load…”
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Molecular Barcoding of Aquatic Oligochaetes: Implications for Biomonitoring: e0125485
Published in PloS one (01-04-2015)“…Aquatic oligochaetes are well recognized bioindicators of quality of sediments and water in watercourses and lakes. However, the difficult taxonomic…”
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Contribution of a IFN-gamma assay in contact tracing for tuberculosis in a low-incidence, high immigration area
Published in Swiss medical weekly (04-10-2008)“…to analyse, in contacts exposed to smear+/culture + (S+/C+) or S-/C+ TB, most of whom are foreign-born: 1) correlation between T-SPOT.TB IFN-gamma release…”
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