Search Results - "Virgilio, Antonella"
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Structural and Biological Features of G-Quadruplex Aptamers as Promising Inhibitors of the STAT3 Signaling Pathway
Published in International journal of molecular sciences (30-05-2023)“…In this paper, we investigate the structural and biological features of G-quadruplex (G4) aptamers as promising antiproliferative compounds affecting the STAT3…”
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Human AP-endonuclease (Ape1) activity on telomeric G4 structures is modulated by acetylatable lysine residues in the N-terminal sequence
Published in DNA repair (01-01-2019)“…[Display omitted] •The G-rich regions of telomeres are hotspots for oxidation which is handled by BER pathway.•Ape1 exerts an important role in telomeric…”
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Exploring New Potential Anticancer Activities of the G-Quadruplexes Formed by [(GTG2T(G3T)3] and Its Derivatives with an Abasic Site Replacing Single Thymidine
Published in International journal of molecular sciences (01-07-2021)“…In this paper, we report our investigations on five T30175 analogues, prepared by replacing sequence thymidines with abasic sites (S) one at a time, in…”
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Improving the Biological Properties of Thrombin-Binding Aptamer by Incorporation of 8-Bromo-2′-Deoxyguanosine and 2′-Substituted RNA Analogues
Published in International journal of molecular sciences (01-11-2023)“…Thrombin-binding aptamer (TBA) is one of the best-known G-quadruplex (G4)-forming aptamers. By adopting its peculiar chair-like G4 structure, TBA can…”
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Antiproliferative Effects of the Aptamer d(GGGT) 4 and Its Analogues with an Abasic-Site Mimic Loop on Different Cancer Cells
Published in International journal of molecular sciences (25-05-2022)“…In this paper, we study the T30923 antiproliferative potential and the contribution of its loop residues in six different human cancer cell lines by preparing…”
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Discovering New G-Quadruplex DNA Catalysts in Enantioselective Sulfoxidation Reaction
Published in International journal of molecular sciences (20-01-2022)“…The natural human telomeric G-quadruplex (G4) sequence d(GGGTTAGGGTTAGGGTTAGGG) HT21 was extensively utilized as a G4 DNA-based catalytic system for…”
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MiR-34a targeting of Notch ligand delta-like 1 impairs CD15+/CD133+ tumor-propagating cells and supports neural differentiation in medulloblastoma
Published in PloS one (12-09-2011)“…Through negative regulation of gene expression, microRNAs (miRNAs) can function as oncosuppressors in cancers, and can themselves show altered expression in…”
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Properties and Potential Antiproliferative Activity of Thrombin-Binding Aptamer (TBA) Derivatives with One or Two Additional G-Tetrads
Published in International journal of molecular sciences (29-11-2022)“…In this paper, we study the biological properties of two TBA analogs containing one and two extra G-tetrads, namely TBAG3 and TBAG4, respectively, and two…”
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Site-specific replacement of the thymine methyl group by fluorine in thrombin binding aptamer significantly improves structural stability and anticoagulant activity
Published in Nucleic acids research (15-12-2015)“…Here we report investigations, based on circular dichroism, nuclear magnetic resonance spectroscopy, molecular modelling, differential scanning calorimetry and…”
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uL3 Mediated Nucleolar Stress Pathway as a New Mechanism of Action of Antiproliferative G-quadruplex TBA Derivatives in Colon Cancer Cells
Published in Biomolecules (Basel, Switzerland) (10-04-2020)“…The antiproliferative G-quadruplex aptamers are a promising and challenging subject in the framework of the anticancer therapeutic oligonucleotides research…”
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Strand directionality affects cation binding and movement within tetramolecular G-quadruplexes
Published in Nucleic acids research (01-11-2012)“…Nuclear magnetic resonance study of G-quadruplex structures formed by d(TG(3)T) and its modified analogs containing a 5'-5' or 3'-3' inversion of polarity…”
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Probing the Importance of the G-Quadruplex Grooves for the Activity of the Anti-HIV-Integrase Aptamer T30923
Published in International journal of molecular sciences (06-08-2020)“…In this paper, we report studies concerning four variants of the G-quadruplex forming anti-HIV-integrase aptamer T30923, in which specific 2'-deoxyguanosines…”
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A straightforward modification in the thrombin binding aptamer improving the stability, affinity to thrombin and nuclease resistance
Published in Organic & biomolecular chemistry (28-11-2014)“…Degradation of nucleic acids in biological environments is the major drawback of the therapeutic use of aptamers. Among the approaches used to circumvent this…”
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Improvement of the activity of the anti-HIV-1 integrase aptamer T30175 by introducing a modified thymidine into the loops
Published in Scientific reports (10-05-2018)“…In this paper, we report our investigations on analogues of the anti-human immunodeficiency virus type 1 (HIV-1) integrase (IN) aptamer T30175 in which the…”
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Aptamers against the β-Conglutin Allergen: Insights into the Behavior of the Shortest Multimeric (Intra)Molecular DNA G-Quadruplex
Published in International journal of molecular sciences (24-01-2021)“…In previous work, a 93-mer aptamer was selected against the anaphylactic allergen, β-conglutin and truncated to an 11-mer, improving the affinity by two orders…”
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5-Hydroxymethyl-2′-Deoxyuridine Residues in the Thrombin Binding Aptamer: Investigating Anticoagulant Activity by Making a Tiny Chemical Modification
Published in Chembiochem : a European journal of chemical biology (03-11-2014)“…We report an investigation into analogues of the thrombin binding aptamer (TBA). Individual thymidines were replaced by the unusual residue…”
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The insertion of two 8-methyl-2′-deoxyguanosine residues in tetramolecular quadruplex structures: trying to orientate the strands
Published in Nucleic acids research (01-01-2012)“…In this article, we report a structural study, based on NMR and CD spectroscopies, and molecular modelling of all possible d(TG3T) and d(TG4T) analogues…”
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The Introduction of Inversion of Polarity Sites in DNA G-Quadruplex Structures: Effects and Perspectives
Published in Mini reviews in medicinal chemistry (01-05-2016)“…The natural sequences of nucleic acids generally consist of nucleotides linked together by canonical 3'-5' phosphodiester bonds. An inversion of polarity site…”
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miR-125b Upregulates miR-34a and Sequentially Activates Stress Adaption and Cell Death Mechanisms in Multiple Myeloma
Published in Molecular therapy. Nucleic acids (07-06-2019)“…miR-125b, ubiquitously expressed and frequently dysregulated in several tumors, has gained special interest in the field of cancer research, displaying either…”
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The “Janus face” of the thrombin binding aptamer: Investigating the anticoagulant and antiproliferative properties through straightforward chemical modifications
Published in Bioorganic chemistry (01-02-2018)“…[Display omitted] •TBA analogues with 5-Br uracil in positions 4 or 13 show enhanced stabilities.•TBA analogues with uracil in positions 4 or 13 show improved…”
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