Search Results - "Vilchez‐Vargas, Ramiro"

Analysis of the microbial gene landscape and transcriptome for aromatic pollutants and alkane degradation using a novel internally calibrated microarray system by Vilchez-Vargas, Ramiro, Geffers, Robert, Suárez-Diez, María, Conte, Ianina, Waliczek, Agnes, Kaser, Vanessa Sabrina, Kralova, Monika, Junca, Howard, Pieper, Dietmar H.

“…Summary Despite various efforts to develop tools to detect and compare the catabolic potential and activity for pollutant degradation in environmental samples,…”
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Functional soil metagenomics: elucidation of polycyclic aromatic hydrocarbon degradation potential following 12 years of in situ bioremediation by Duarte, Márcia, Nielsen, Agnes, Camarinha‐Silva, Amélia, Vilchez‐Vargas, Ramiro, Bruls, Thomas, Wos‐Oxley, Melissa L., Jauregui, Ruy, Pieper, Dietmar H.

“…Summary A culture‐independent function‐based screening approach was used to assess the microbial aerobic catabolome for polycyclic aromatic hydrocarbons…”
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Metabolic networks, microbial ecology and ‘omics' technologies: towards understanding in situ biodegradation processes by Vilchez-Vargas, Ramiro, Junca, Howard, Pieper, Dietmar H

“…Microbial degradation is the main mechanism responsible for the recovery of contaminated sites, where a huge body of investigations is available in which most…”
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Anti‐TNFα treatment in Crohn’s disease: Impact on hepatic steatosis, gut‐derived hormones and metabolic status by Manka, Paul, Sydor, Svenja, Wase, Nishikant, Best, Jan, Brandenburg, Malte, Hellbeck, Annika, Schänzer, Julia, Vilchez‐Vargas, Ramiro, Link, Alexander, Figge, Anja, Jähnert, Andreas, Arnim, Ulrike, Coombes, Jason D., Cubero, Francisco‐Javier, Kahraman, Alisan, Kim, Moon‐Sung, Kälsch, Julia, Kinner, Sonja, Faber, Klaas‐Nico, Moshage, Han, Gerken, Guido, Syn, Wing‐Kin, Friedman, Scott L., Canbay, Ali, Bechmann, Lars P.

“…Background and Aims An association between Crohn's disease (CD) and hepatic steatosis has been reported. However, the underlying mechanisms of steatosis…”
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Analysis of Transcriptionally Active Bacteria Throughout the Gastrointestinal Tract of Healthy Individuals by Vasapolli, Riccardo, Schütte, Kerstin, Schulz, Christian, Vital, Marius, Schomburg, Dirk, Pieper, Dietmar H., Vilchez-Vargas, Ramiro, Malfertheiner, Peter

“…The microbiome varies along the human gastrointestinal (GI) tract with exposure to luminal and mucosal factors. We analyzed active bacterial communities at 8…”
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The full-scale anaerobic digestion microbiome is represented by specific marker populations by De Vrieze, Jo, Raport, Linde, Roume, Hugo, Vilchez-Vargas, Ramiro, Jáuregui, Ruy, Pieper, Dietmar H., Boon, Nico

“…Anaerobic digestion is a well-established microbial-based technology for the treatment of organic waste streams and subsequent biogas recovery. A robust and…”
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Characterisation of the human uterine microbiome in non-pregnant women through deep sequencing of the V1-2 region of the 16S rRNA gene by Verstraelen, Hans, Vilchez-Vargas, Ramiro, Desimpel, Fabian, Jauregui, Ruy, Vankeirsbilck, Nele, Weyers, Steven, Verhelst, Rita, De Sutter, Petra, Pieper, Dietmar H, Van De Wiele, Tom

“…Background. It is widely assumed that the uterine cavity in non-pregnant women is physiologically sterile, also as a premise to the long-held view that human…”
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Ursodeoxycholic Acid and Its Taurine- or Glycine-Conjugated Species Reduce Colitogenic Dysbiosis and Equally Suppress Experimental Colitis in Mice by Van den Bossche, Lien, Hindryckx, Pieter, Devisscher, Lindsey, Devriese, Sarah, Van Welden, Sophie, Holvoet, Tom, Vilchez-Vargas, Ramiro, Vital, Marius, Pieper, Dietmar H, Vanden Bussche, Julie, Vanhaecke, Lynn, Van de Wiele, Tom, De Vos, Martine, Laukens, Debby

“…The promising results seen in studies of secondary bile acids in experimental colitis suggest that they may represent an attractive and safe class of drugs for…”
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Inoculum selection is crucial to ensure operational stability in anaerobic digestion by De Vrieze, Jo, Gildemyn, Sylvia, Vilchez-Vargas, Ramiro, Jáuregui, Ruy, Pieper, Dietmar H., Verstraete, Willy, Boon, Nico

“…Anaerobic digestion is considered a key technology for the future bio-based economy. The microbial consortium carrying out the anaerobic digestion process is…”
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Microbial composition of tumorous and adjacent gastric tissue is associated with prognosis of gastric cancer by Lehr, Konrad, Nikitina, Darja, Vilchez-Vargas, Ramiro, Steponaitiene, Ruta, Thon, Cosima, Skieceviciene, Jurgita, Schanze, Denny, Zenker, Martin, Malfertheiner, Peter, Kupcinskas, Juozas, Link, Alexander

“…Helicobacter pylori ( H. pylori ) infection has been considered as the main causal factor in gastric carcinogenesis, but other bacterial species may also play…”
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High-rate activated sludge communities have a distinctly different structure compared to low-rate sludge communities, and are less sensitive towards environmental and operational variables by Meerburg, Francis A., Vlaeminck, Siegfried E., Roume, Hugo, Seuntjens, Dries, Pieper, Dietmar H., Jauregui, Ruy, Vilchez-Vargas, Ramiro, Boon, Nico

“…High-rate activated sludge processes allow for the recovery of organics and energy from wastewaters. These systems are operated at a short sludge retention…”
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Removal of nickel(II) from wastewater using a zeolite-packed anaerobic bioreactor: Bacterial diversity and community structure shifts by Parades-Aguilar, Jonathan, Reyes-Martínez, Viviana, Bustamante, Guadalupe, Almendáriz-Tapia, Francisco J., Martínez-Meza, Guadalupe, Vílchez-Vargas, Ramiro, Link, Alexander, Certucha-Barragán, María T., Calderón, Kadiya

“…In recent years, overexploited industrialization and urbanization activities have led to significant amounts of heavy metals released into the environment…”
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Prediction of anastomotic insufficiency based on the mucosal microbiome prior to colorectal surgery: a proof-of-principle study by Lehr, Konrad, Lange, Undine Gabriele, Hipler, Noam Mathias, Vilchez-Vargas, Ramiro, Hoffmeister, Albrecht, Feisthammel, Jürgen, Buchloh, Dorina, Schanze, Denny, Zenker, Martin, Gockel, Ines, Link, Alexander, Jansen-Winkeln, Boris

“…Anastomotic leakage (AL) is a potentially life-threatening complication following colorectal cancer (CRC) resection. In this study, we aimed to unravel…”
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High-resolution taxonomic profiling of the subgingival microbiome for biomarker discovery and periodontitis diagnosis by Szafranski, Szymon P, Wos-Oxley, Melissa L, Vilchez-Vargas, Ramiro, Jáuregui, Ruy, Plumeier, Iris, Klawonn, Frank, Tomasch, Jürgen, Meisinger, Christa, Kühnisch, Jan, Sztajer, Helena, Pieper, Dietmar H, Wagner-Döbler, Irene

“…The oral microbiome plays a key role for caries, periodontitis, and systemic diseases. A method for rapid, high-resolution, robust taxonomic profiling of…”
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Primers matter: Influence of the primer selection on human fungal detection using high throughput sequencing by Wiesmann, Crispin, Lehr, Konrad, Kupcinskas, Juozas, Vilchez-Vargas, Ramiro, Link, Alexander

“…Microbiota research has received an increasing attention for its role in disease development and fungi are considered as one of the key players in the…”
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Profiling of the Bacterial Microbiota along the Murine Alimentary Tract by Vilchez-Vargas, Ramiro, Salm, Franz, Znalesniak, Eva B, Haupenthal, Katharina, Schanze, Denny, Zenker, Martin, Link, Alexander, Hoffmann, Werner

“…Here, the spatial distribution of the bacterial flora along the murine alimentary tract was evaluated using high throughput sequencing in wild-type and…”
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High‐fiber and high‐protein diets shape different gut microbial communities, which ecologically behave similarly under stress conditions, as shown in a gastrointestinal simulator by Marzorati, Massimo, Vilchez‐Vargas, Ramiro, Bussche, Julie Vanden, Truchado, Pilar, Jauregui, Ruy, El Hage, Racha Ahmad, Pieper, Dietmar H., Vanhaecke, Lynn, Wiele, Tom

“…The aim of this work was to investigate the relationship between the structure of gut microbial communities fed with different diets (i.e. high‐protein—HP‐…”
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Optimized cryopreservation of mixed microbial communities for conserved functionality and diversity by Kerckhof, Frederiek-Maarten, Courtens, Emilie N P, Geirnaert, Annelies, Hoefman, Sven, Ho, Adrian, Vilchez-Vargas, Ramiro, Pieper, Dietmar H, Jauregui, Ruy, Vlaeminck, Siegfried E, Van de Wiele, Tom, Vandamme, Peter, Heylen, Kim, Boon, Nico

“…The use of mixed microbial communities (microbiomes) for biotechnological applications has steadily increased over the past decades. However, these microbiomes…”
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A robust nitrifying community in a bioreactor at 50 °C opens up the path for thermophilic nitrogen removal by Courtens, Emilie NP, Spieck, Eva, Vilchez-Vargas, Ramiro, Bodé, Samuel, Boeckx, Pascal, Schouten, Stefan, Jauregui, Ruy, Pieper, Dietmar H, Vlaeminck, Siegfried E, Boon, Nico

“…The increasing production of nitrogen-containing fertilizers is crucial to meet the global food demand, yet high losses of reactive nitrogen associated with…”
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Plasma Levels of Omega-3 and Omega-6 Derived Oxylipins Are Associated with Fecal Microbiota Composition in Young Adults by Xu, Huiwen, Jurado-Fasoli, Lucas, Ortiz-Alvarez, Lourdes, Osuna-Prieto, Francisco J, Kohler, Isabelle, Di, Xinyu, Vilchez-Vargas, Ramiro, Link, Alexander, Plaza-Díaz, Julio, Gil, Angel, Rensen, Patrick C N, Ruiz, Jonatan R, Martinez-Tellez, Borja

“…Pre-clinical studies suggest that circulating oxylipins, i.e., the oxidation products of polyunsaturated fatty acids (PUFAs), modulate gut microbiota…”
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