Search Results - "Vieira, Fabio Rocha Jimenez"

Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP) by Carpenter, Eric J, Matasci, Naim, Ayyampalayam, Saravanaraj, Wu, Shuangxiu, Sun, Jing, Yu, Jun, Jimenez Vieira, Fabio Rocha, Bowler, Chris, Dorrell, Richard G, Gitzendanner, Matthew A, Li, Ling, Du, Wensi, K. Ullrich, Kristian, Wickett, Norman J, Barkmann, Todd J, Barker, Michael S, Leebens-Mack, James H, Wong, Gane Ka-Shu

“…Abstract Background The 1000 Plant transcriptomes initiative (1KP) explored genetic diversity by sequencing RNA from 1,342 samples representing 1,173 species…”
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Genome-enabled phylogenetic and functional reconstruction of an araphid pennate diatom Plagiostriata sp. CCMP470, previously assigned as a radial centric diatom, and its bacterial commensal by Sato, Shinya, Nanjappa, Deepak, Dorrell, Richard G., Vieira, Fabio Rocha Jimenez, Kazamia, Elena, Tirichine, Leila, Veluchamy, Alaguraj, Heilig, Roland, Aury, Jean-Marc, Jaillon, Olivier, Wincker, Patrick, Fussy, Zoltan, Obornik, Miroslav, Muñoz-Gómez, Sergio A., Mann, David G., Bowler, Chris, Zingone, Adriana

“…Diatoms are an ecologically fundamental and highly diverse group of algae, dominating marine primary production in both open-water and coastal communities. The…”
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Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms by Rastogi, Achal, Maheswari, Uma, Dorrell, Richard G., Vieira, Fabio Rocha Jimenez, Maumus, Florian, Kustka, Adam, McCarthy, James, Allen, Andy E., Kersey, Paul, Bowler, Chris, Tirichine, Leila

“…Diatoms are one of the most successful and ecologically important groups of eukaryotic phytoplankton in the modern ocean. Deciphering their genomes is a key…”
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Characterization of a Marine Diatom Chitin Synthase Using a Combination of Meta-Omics, Genomics, and Heterologous Expression Approaches by Shao, Zhanru, Ampomah, Osei, Vieira, Fabio Rocha Jimenez, Dorrell, Richard G, Li, Shaoxuan, Tirichine, Leila, Bulone, Vincent, Duan, Delin, Bowler, Chris

“…β-Chitin has important ecological and physiological roles and potential for widespread applications, but the characterization of chitin-related enzymes from…”
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A genomics approach reveals the global genetic polymorphism, structure, and functional diversity of ten accessions of the marine model diatom Phaeodactylum tricornutum by Rastogi, Achal, Vieira, Fabio Rocha Jimenez, Deton-Cabanillas, Anne-Flore, Veluchamy, Alaguraj, Cantrel, Catherine, Wang, Gaohong, Vanormelingen, Pieter, Bowler, Chris, Piganeau, Gwenael, Hu, Hanhua, Tirichine, Leila

“…Diatoms emerged in the Mesozoic period and presently constitute one of the main primary producers in the world’s ocean and are of a major economic importance…”
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Genome wide natural variation of H3K27me3 selectively marks genes predicted to be important for cell differentiation in Phaeodactylum tricornutum by Zhao, Xue, Rastogi, Achal, Deton Cabanillas, Anne Flore, Ait Mohamed, Ouardia, Cantrel, Catherine, Lombard, Berangère, Murik, Omer, Genovesio, Auguste, Bowler, Chris, Bouyer, Daniel, Loew, Damarys, Lin, Xin, Veluchamy, Alaguraj, Vieira, Fabio Rocha Jimenez, Tirichine, Leila

“…Summary In multicellular organisms, Polycomb Repressive Complex2 (PRC2) is known to deposit tri‐methylation of lysine 27 of histone H3 (H3K27me3) to establish…”
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Meta-Omics Reveals Genetic Flexibility of Diatom Nitrogen Transporters in Response to Environmental Changes by Busseni, Greta, Rocha Jimenez Vieira, Fabio, Amato, Alberto, Pelletier, Eric, Pierella Karlusich, Juan J, Ferrante, Maria I, Wincker, Patrick, Rogato, Alessandra, Bowler, Chris, Sanges, Remo, Maiorano, Luigi, Chiurazzi, Maurizio, Ribera d'Alcalà, Maurizio, Caputi, Luigi, Iudicone, Daniele

“…Diatoms (Bacillariophyta), one of the most abundant and diverse groups of marine phytoplankton, respond rapidly to the supply of new nutrients, often…”
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Endocytosis-mediated siderophore uptake as a strategy for Fe acquisition in diatoms by Kazamia, Elena, Sutak, Robert, Paz-Yepes, Javier, Dorrell, Richard G, Vieira, Fabio Rocha Jimenez, Mach, Jan, Morrissey, Joe, Leon, Sébastien, Lam, France, Pelletier, Eric, Camadro, Jean-Michel, Bowler, Chris, Lesuisse, Emmanuel

“…Phytoplankton growth is limited in vast oceanic regions by the low bioavailability of iron. Iron fertilization often results in diatom blooms, yet the…”
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The model diatom Phaeodactylum tricornutum provides insights into the diversity and function of microeukaryotic DNA methyltransferases by Hoguin, Antoine, Yang, Feng, Groisillier, Agnès, Bowler, Chris, Genovesio, Auguste, Ait-Mohamed, Ouardia, Vieira, Fabio Rocha Jimenez, Tirichine, Leila

“…Cytosine methylation is an important epigenetic mark involved in the transcriptional control of transposable elements in mammals, plants and fungi. The…”
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Probing the Diversity of Polycomb and Trithorax Proteins in Cultured and Environmentally Sampled Microalgae by Zhao, Xue, Deton Cabanillas, Anne Flore, Veluchamy, Alaguraj, Bowler, Chris, Vieira, Fabio Rocha Jimenez, Tirichine, Leila

“…Polycomb (PcG) and Trithorax (TrxG) complexes are two evolutionarily conserved epigenetic regulatory components that act antagonistically to regulate the…”
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems by Caputi, Luigi, Carradec, Quentin, Eveillard, Damien, Kirilovsky, Amos, Pelletier, Eric, Pierella Karlusich, Juan J., Rocha Jimenez Vieira, Fabio, Villar, Emilie, Chaffron, Samuel, Scalco, Eleonora, Acinas, Silvia G., Alberti, Adriana, Bertrand, Alexis, Biard, Tristan, Bittner, Lucie, Boccara, Martine, Brum, Jennifer R., Busseni, Greta, Carratalà, Anna, Claustre, Hervé, Coelho, Luis Pedro, Colin, Sébastien, D'Aniello, Salvatore, Da Silva, Corinne, Del Core, Marianna, Doré, Hugo, Kokoszka, Florian, Lejeusne, Christophe, Lepoivre, Cyrille, Lima‐Mendez, Gipsi, Lombard, Fabien, Lukeš, Julius, Maillet, Nicolas, Madoui, Mohammed‐Amin, Martinez, Elodie, Mazzocchi, Maria Grazia, Néou, Mario B., Paz‐Yepes, Javier, Poulain, Julie, Ramondenc, Simon, Romagnan, Jean‐Baptiste, Salvagio Manta, Daniela, Sanges, Remo, Speich, Sabrina, Sprovieri, Mario, Sunagawa, Shinichi, Tanaka, Atsuko, Tirichine, Leila, Trottier, Camille, Uitz, Julia, Veluchamy, Alaguraj, Veselá, Jana, Vincent, Flora, Yau, Sheree, Kandels‐Lewis, Stefanie, Dimier, Céline, Picheral, Marc, Bork, Peer, Boss, Emmanuel, Vargas, Colomban, Follows, Michael J., Grimsley, Nigel, Hingamp, Pascal, Karsenti, Eric, Stemmann, Lars, Sullivan, Matthew B., Tagliabue, Alessandro, Garczarek, Laurence, d'Ortenzio, Fabrizio, Testor, Pierre, d'Alcalà, Maurizio Ribera, Wincker, Patrick, Bowler, Chris, Iudicone, Daniele, Acinas, Silvia G., Bork, Peer, Boss, Emmanuel, Bowler, Chris, Vargas, Colomban, Follows, Michael J., Gorsky, Gabriel, Grimsley, Nigel, Hingamp, Pascal, Iudicone, Daniele, Jaillon, Olivier, Kandels‐Lewis, Stefanie, Krzic, Uros, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Raes, Jeroen, Reynaud, Emmanuel G., Sardet, Christian, Sieracki, Mike, Stemmann, Lars, Sullivan, Matthew B., Sunagawa, Shinichi, Velayoudon, Didier, Weissenbach, Jean, Wincker, Patrick

“…Predicting responses of plankton to variations in essential nutrients is hampered by limited in situ measurements, a poor understanding of community…”
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A multi-objective optimization approach accurately resolves protein domain architectures by Bernardes, J S, Vieira, F R J, Zaverucha, G, Carbone, A

“…Given a protein sequence and a number of potential domains matching it, what are the domain content and the most likely domain architecture for the sequence?…”
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Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae by Dorrell, Richard G, Kuo, Alan, Füssy, Zoltan, Richardson, Elisabeth H, Salamov, Asaf, Zarevski, Nikola, Freyria, Nastasia J, Ibarbalz, Federico M, Jenkins, Jerry, Pierella Karlusich, Juan Jose, Stecca Steindorff, Andrei, Edgar, Robyn E, Handley, Lori, Lail, Kathleen, Lipzen, Anna, Lombard, Vincent, McFarlane, John, Nef, Charlotte, Novák Vanclová, Anna Mg, Peng, Yi, Plott, Chris, Potvin, Marianne, Vieira, Fabio Rocha Jimenez, Barry, Kerrie, de Vargas, Colomban, Henrissat, Bernard, Pelletier, Eric, Schmutz, Jeremy, Wincker, Patrick, Dacks, Joel B, Bowler, Chris, Grigoriev, Igor V, Lovejoy, Connie

“…Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of…”
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Inter-comparison of marine microbiome sampling protocols by Pascoal, Francisco, Tomasino, Maria Paola, Piredda, Roberta, Quero, Grazia Marina, Torgo, Luís, Poulain, Julie, Galand, Pierre E, Fuhrman, Jed A, Mitchell, Alex, Tinta, Tinkara, Turk Dermastia, Timotej, Fernandez-Guerra, Antonio, Vezzi, Alessandro, Logares, Ramiro, Malfatti, Francesca, Endo, Hisashi, Dąbrowska, Anna Maria, De Pascale, Fabio, Sánchez, Pablo, Henry, Nicolas, Fosso, Bruno, Wilson, Bryan, Toshchakov, Stephan, Ferrant, Gregory Kevin, Grigorov, Ivo, Vieira, Fabio Rocha Jimenez, Costa, Rodrigo, Pesant, Stéphane, Magalhães, Catarina

“…Research on marine microbial communities is growing, but studies are hard to compare because of variation in seawater sampling protocols. To help researchers…”
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Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae by Dorrell, Richard, Kuo, Alan, Füssy, Zoltan, Richardson, Elisabeth, Salamov, Asaf, Zarevski, Nikola, Freyria, Nastasia, Ibarbalz, Federico, Jenkins, Jerry, Karlusich, Juan Jose Pierella, Steindorff, Andrei Stecca, Edgar, Robyn, Handley, Lori, Lail, Kathleen, Lipzen, Anna, Lombard, Vincent, Mcfarlane, John, Nef, Charlotte, Novák Vanclová, Anna M.G., Peng, Yi, Plott, Chris, Potvin, Marianne, Vieira, Fabio Rocha Jimenez, Barry, Kerrie, Dacks, Joel, de Vargas, Colomban, Henrissat, Bernard, Pelletier, Eric, Schmutz, Jeremy, Wincker, Patrick, Bowler, Chris, Grigoriev, Igor, Lovejoy, Connie

“…Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of…”
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Scheduling links for heavy traffic on interfering routes in wireless mesh networks by Vieira, Fabio R.J., de Rezende, José F., Barbosa, Valmir C., Fdida, Serge

“…We consider wireless mesh networks and the problem of scheduling the links of a given set of routes under the assumption of a heavy-traffic pattern. We assume…”
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Local heuristic for the refinement of multi-path routing in wireless mesh networks by Vieira, Fabio R.J., de Rezende, José F., Barbosa, Valmir C., Fdida, Serge

“…We consider wireless mesh networks and the problem of routing end-to-end traffic over multiple paths for the same origin–destination pair with minimal…”
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Optimization of supply diversity for the self-assembly of simple objects in two and three dimensions by Vieira, Fabio R. J., Barbosa, Valmir C.

“…The field of algorithmic self-assembly is concerned with the design and analysis of self-assembly systems from a computational perspective, that is, from the…”
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