Search Results - "Viara, Eric"

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing by Servant, Nicolas, Varoquaux, Nelle, Lajoie, Bryan R, Viara, Eric, Chen, Chong-Jian, Vert, Jean-Philippe, Heard, Edith, Dekker, Job, Barillot, Emmanuel

“…HiC-Pro is an optimized and flexible pipeline for processing Hi-C data from raw reads to normalized contact maps. HiC-Pro maps reads, detects valid ligation…”
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Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm by Stoll, Gautier, Viara, Eric, Barillot, Emmanuel, Calzone, Laurence

“…Mathematical modeling is used as a Systems Biology tool to answer biological questions, and more precisely, to validate a network that describes biological…”
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UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling by Stoll, Gautier, Naldi, Aurélien, Noël, Vincent, Viara, Eric, Barillot, Emmanuel, Kroemer, Guido, Thieffry, Denis, Calzone, Laurence

“…Mathematical modeling aims at understanding the effects of biological perturbations, suggesting ways to intervene and to reestablish proper cell functioning in…”
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WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically by Noël, Vincent, Ruscone, Marco, Stoll, Gautier, Viara, Eric, Zinovyev, Andrei, Barillot, Emmanuel, Calzone, Laurence

“…WebMaBoSS is an easy-to-use web interface for conversion, storage, simulation and analysis of Boolean models that allows to get insight from these models…”
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MaBoSS 2.0: an environment for stochastic Boolean modeling by Stoll, Gautier, Caron, Barthélémy, Viara, Eric, Dugourd, Aurélien, Zinovyev, Andrei, Naldi, Aurélien, Kroemer, Guido, Barillot, Emmanuel, Calzone, Laurence

“…Modeling of signaling pathways is an important step towards the understanding and the treatment of diseases such as cancers, HIV or auto-immune diseases…”
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Meaningful Work and Positive Job Outcomes: Moderating the Relationship with Work-Family Outcomes by Viara, Eric

“…This study examined the relationship between meaningful work and job satisfaction and meaningful work and job engagement. In addition to the relationship…”
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BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks by Zinovyev, Andrei, Viara, Eric, Calzone, Laurence, Barillot, Emmanuel

“…BiNoM (Biological Network Manager) is a new bioinformatics software that significantly facilitates the usage and the analysis of biological networks in…”
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NaviCell Web Service for network-based data visualization by Bonnet, Eric, Viara, Eric, Kuperstein, Inna, Calzone, Laurence, Cohen, David P A, Barillot, Emmanuel, Zinovyev, Andrei

“…Data visualization is an essential element of biological research, required for obtaining insights and formulating new hypotheses on mechanisms of health and…”
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A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples by Bernard, Elsa, Jacob, Laurent, Mairal, Julien, Viara, Eric, Vert, Jean-Philippe

“…Detecting and quantifying isoforms from RNA-seq data is an important but challenging task. The problem is often ill-posed, particularly at low coverage. One…”
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NaviCom: a web application to create interactive molecular network portraits using multi-level omics data by Dorel, Mathurin, Viara, Eric, Barillot, Emmanuel, Zinovyev, Andrei, Kuperstein, Inna

“…Abstract Human diseases such as cancer are routinely characterized by high-throughput molecular technologies, and multi-level omics data are accumulated in…”
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NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps by Kuperstein, Inna, Cohen, David P A, Pook, Stuart, Viara, Eric, Calzone, Laurence, Barillot, Emmanuel, Zinovyev, Andrei

“…Molecular biology knowledge can be formalized and systematically represented in a computer-readable form as a comprehensive map of molecular interactions…”
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The HuGeMap Database: interconnection and visualization of human genome maps by Barillot, Emmanuel, Pook, Stuart, Guyon, Frédéric, Cussat-Blanc, Christophe, Viara, Éric, Vaysseix, Guy

“…The HuGeMap database stores the major genetic and physical maps of the human genome. HuGeMap is accessible on the Web at…”
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VAMP: Visualization and analysis of array-CGH, transcriptome and other molecular profiles by Rosa, Philippe La, Viara, Eric, Hupé, Philippe, Pierron, Gaëlle, Liva, Stéphane, Neuvial, Pierre, Brito, Isabel, Lair, Séverine, Servant, Nicolas, Robine, Nicolas, Manié, Elodie, Brennetot, Caroline, Janoueix-Lerosey, Isabelle, Raynal, Virginie, Gruel, Nadège, Rouveirol, Céline, Stransky, Nicolas, Stern, Marc-Henri, Delattre, Olivier, Aurias, Alain, Radvanyi, François, Barillot, Emmanuel

“…Motivation: Microarray-based CGH (Comparative Genomic Hybridization), transcriptome arrays and other large-scale genomic technologies are now routinely used to…”
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CAPweb: a bioinformatics CGH array Analysis Platform by Liva, Stéphane, Hupé, Philippe, Neuvial, Pierre, Brito, Isabel, Viara, Eric, Rosa, Philippe La, Barillot, Emmanuel

“…Assessing variations in DNA copy number is crucial for understanding constitutional or somatic diseases, particularly cancers. The recently developed array-CGH…”
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Topic: The IRCAM Musical Workstation: CPOS: A Real-Time Operating System for the IRCAM Muscial Workstation by Viara, Eric

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CPOS: A Real-Time Operating System for the IRCAM Muscial Workstation by Viara, Eric

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O11: Analysis of array CGH experiments: methods for the identification of informative genomic alterations by Hupé, Philippe, Rouveirol, Céline, Brito, Isabel, Neuvial, Pierre, La Rosa, Philippe, Viara, Eric, Stransky, Nicolas, Pierron, Gaëlle, Manié, Elodie, Brennetot, Caroline, Jannoueix, Isabelle, Gruel, Nadège, Aurias, Alain, Delattre, Olivier, Radvanyi, François, Barillot, Emmanuel

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P23: CAP: a Web-based platform for CGH-array management and analysis by La Rosa, Philippe, Liva, Stéphane, Hupé, Philippe, Pierron, Gaëlle, Neuvial, Pierre, Brito, Isabel, Viara, Eric, Lair, Séverine, Servant, Nicolas, Robine, Nicolas, Manié, Elodie, Brennetot, Caroline, Jannoueix, Isabelle, Gruel, Nadège, Rouveirol, Céline, Stransky, Nicolas, Stern, Marc-Henri, Radvanyi, François, Delattre, Olivier, Aurias, Alain, Barillot, Emmanuel

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Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm by Stoll, Gautier, Viara, Eric, Barillot, Emmanuel, Calzone, Laurence

“…This article presents an algorithm that allows modeling of biological networks in a qualitative framework with continuous time. Mathematical modeling is used…”
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CPOS: A Real-Time Operating System for the IRCAM Musical Workstation by Viara, Eric

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