Search Results - "Vesth, Tammi"

A comparative genomics study of 23 Aspergillus species from section Flavi by Kjærbølling, Inge, Vesth, Tammi, Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kildgaard, Sara, Petersen, Thomas Isbrandt, Kuo, Alan, Sato, Atsushi, Lyhne, Ellen K., Kogle, Martin E., Wiebenga, Ad, Kun, Roland S., Lubbers, Ronnie J. M., Mäkelä, Miia R., Barry, Kerrie, Chovatia, Mansi, Clum, Alicia, Daum, Chris, Haridas, Sajeet, He, Guifen, LaButti, Kurt, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Riley, Robert, Salamov, Asaf, Simmons, Blake A., Magnuson, Jon K., Henrissat, Bernard, Mortensen, Uffe H., Larsen, Thomas O., de Vries, Ronald P., Grigoriev, Igor V., Machida, Masayuki, Baker, Scott E., Andersen, Mikael R.

“…Section Flavi encompasses both harmful and beneficial Aspergillus species, such as Aspergillus oryzae , used in food fermentation and enzyme production, and…”
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Strategies to establish the link between biosynthetic gene clusters and secondary metabolites by Kjærbølling, Inge, Mortensen, Uffe H., Vesth, Tammi, Andersen, Mikael R.

“…Filamentous fungi produce a vast number of bioactive secondary metabolites (SMs), some of which have found applications in the pharmaceutical industry…”
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CMG-biotools, a free workbench for basic comparative microbial genomics by Vesth, Tammi, Lagesen, Karin, Acar, Öncel, Ussery, David

“…Today, there are more than a hundred times as many sequenced prokaryotic genomes than were present in the year 2000. The economical sequencing of genomic DNA…”
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Novofumigatonin biosynthesis involves a non-heme iron-dependent endoperoxide isomerase for orthoester formation by Matsuda, Yudai, Bai, Tongxuan, Phippen, Christopher B. W., Nødvig, Christina S., Kjærbølling, Inge, Vesth, Tammi C., Andersen, Mikael R., Mortensen, Uffe H., Gotfredsen, Charlotte H., Abe, Ikuro, Larsen, Thomas O.

“…Novofumigatonin ( 1 ), isolated from the fungus Aspergillus novofumigatus , is a heavily oxygenated meroterpenoid containing a unique orthoester moiety…”
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Genus level analysis of PKS-NRPS and NRPS-PKS hybrids reveals their origin in Aspergilli by Theobald, Sebastian, Vesth, Tammi C, Andersen, Mikael R

“…Filamentous fungi produce a vast amount of bioactive secondary metabolites (SMs) synthesized by e.g. hybrid polyketide synthase-nonribosomal peptide synthetase…”
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Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species by Kjærbølling, Inge, Vesth, Tammi C., Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kuo, Alan, Bowyer, Paul, Matsuda, Yudai, Mondo, Stephen, Lyhne, Ellen K., Kogle, Martin E., Clum, Alicia, Lipzen, Anna, Salamov, Asaf, Ngan, Chew Yee, Daum, Chris, Chiniquy, Jennifer, Barry, Kerrie, LaButti, Kurt, Haridas, Sajeet, Simmons, Blake A., Magnuson, Jon K., Mortensen, Uffe H., Larsen, Thomas O., Grigoriev, Igor V., Baker, Scott E., Andersen, Mikael R.

“…The fungal genus of Aspergillus is highly interesting, containing everything from industrial cell factories, model organisms, and human pathogens. In…”
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Machine learning predicts and provides insights into milk acidification rates of Lactococcus lactis by Karlsen, Signe Tang, Vesth, Tammi Camilla, Oregaard, Gunnar, Poulsen, Vera Kuzina, Lund, Ole, Henderson, Gemma, Bælum, Jacob

“…Lactococcus lactis strains are important components in industrial starter cultures for cheese manufacturing. They have many strain-dependent properties, which…”
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Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication by Theobald, Sebastian, Vesth, Tammi C., Rendsvig, Jakob Kræmmer, Nielsen, Kristian Fog, Riley, Robert, de Abreu, Lucas Magalhães, Salamov, Asaf, Frisvad, Jens Christian, Larsen, Thomas Ostenfeld, Andersen, Mikael Rørdam, Hoof, Jakob Blæsbjerg

“…The increased interest in secondary metabolites (SMs) has driven a number of genome sequencing projects to elucidate their biosynthetic pathways. As a result,…”
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Resistance Gene-Directed Genome Mining of 50 Aspergillus Species by Kjærbølling, Inge, Vesth, Tammi, Andersen, Mikael R

“…Fungal secondary metabolites are a rich source of valuable natural products, and genome sequencing has revealed a proliferation of predicted biosynthetic gene…”
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FunGeneClusterS: Predicting fungal gene clusters from genome and transcriptome data by Vesth, Tammi C., Brandl, Julian, Andersen, Mikael Rørdam

“…Secondary metabolites of fungi are receiving an increasing amount of interest due to their prolific bioactivities and the fact that fungal biosynthesis of…”
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Amino acid usage is asymmetrically biased in AT- and GC-rich microbial genomes by Bohlin, Jon, Brynildsrud, Ola, Vesth, Tammi, Skjerve, Eystein, Ussery, David W

“…Genomic base composition ranges from less than 25% AT to more than 85% AT in prokaryotes. Since only a small fraction of prokaryotic genomes is not protein…”
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Genomic taxonomy of Vibrios by Thompson, Cristiane C, Vicente, Ana Carolina P, Souza, Rangel C, Vasconcelos, Ana Tereza R, Vesth, Tammi, Alves, Jr, Nelson, Ussery, David W, Iida, Tetsuya, Thompson, Fabiano L

“…Vibrio taxonomy has been based on a polyphasic approach. In this study, we retrieve useful taxonomic information (i.e. data that can be used to distinguish…”
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Bayesian prediction of bacterial growth temperature range based on genome sequences by Jensen, Dan B, Vesth, Tammi C, Hallin, Peter F, Pedersen, Anders G, Ussery, David W

“…The preferred habitat of a given bacterium can provide a hint of which types of enzymes of potential industrial interest it might produce. These might include…”
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Genomic Analysis of Aspergillus Section Terrei Reveals a High Potential in Secondary Metabolite Production and Plant Biomass Degradation by Theobald, Sebastian, Vesth, Tammi C, Geib, Elena, Nybo, Jane L, Frisvad, Jens C, Larsen, Thomas O, Kuo, Alan, LaButti, Kurt, Lyhne, Ellen K, Kjærbølling, Inge, Ledsgaard, Line, Barry, Kerrie, Clum, Alicia, Chen, Cindy, Nolan, Matt, Sandor, Laura, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Salamov, Asaf, Riley, Robert, Wiebenga, Ad, Müller, Astrid, Kun, Roland S, Dos Santos Gomes, Ana Carolina, Henrissat, Bernard, Magnuson, Jon K, Simmons, Blake A, Mäkelä, Miia R, Mortensen, Uffe H, Grigoriev, Igor V, Brock, Matthias, Baker, Scott E, de Vries, Ronald P, Andersen, Mikael R

“…has attracted interest due to its application in industrial biotechnology, particularly for the production of itaconic acid and bioactive secondary…”
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Genome-Wide Assessment of Stress-Associated Genes in Bifidobacteria by Schöpping, Marie, Vesth, Tammi, Jensen, Kristian, Franzén, Carl Johan, Zeidan, Ahmad A

“…Over the last decade, the genomes of several strains have been sequenced, delivering valuable insights into their genetic makeup. However, bifidobacterial…”
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Resistance Gene-Directed Genome Mining of 50 italic toggle="yes">Aspergillus /italic> Species by Inge Kjærbølling, Tammi Vesth, Mikael R. Andersen

“…ABSTRACT Fungal secondary metabolites are a rich source of valuable natural products, and genome sequencing has revealed a proliferation of predicted…”
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Resistance Gene-Directed Genome Mining of 50 Aspergillus Species by Kjærbølling, Inge, Vesth, Tammi, Andersen, Mikael R

“…Fungal secondary metabolites are a rich source of valuable natural products, and genome sequencing has revealed a proliferation of predicted biosynthetic gene…”
Get full text

Uncovering secondary metabolite evolution and biosynthesis using gene cluster networks and genetic dereplication by Theobald, Sebastian, Vesth, Tammi C., Rendsvig, Jakob Kræmmer, Nielsen, Kristian Fog, Riley, Robert, de Abreu, Lucas Magalhães, Salamov, Asaf, Frisvad, Jens Christian, Larsen, Thomas Ostenfeld, Andersen, Mikael Rørdam, Hoof, Jakob Blæsbjerg

“…Abstract The increased interest in secondary metabolites (SMs) has driven a number of genome sequencing projects to elucidate their biosynthetic pathways. As a…”
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A comparative genomics study of 23 Aspergillus species from section Flavi by Kjærbølling, Inge, Vesth, Tammi, Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kildgaard, Sara, Petersen, Thomas Isbrandt, Kuo, Alan, Sato, Atsushi, Lyhne, Ellen K., Kogle, Martin E., Wiebenga, Ad, Kun, Roland S., Lubbers, Ronnie J. M., Mäkelä, Miia R., Barry, Kerrie, Chovatia, Mansi, Clum, Alicia, Daum, Chris, Haridas, Sajeet, He, Guifen, LaButti, Kurt, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Riley, Robert, Salamov, Asaf, Simmons, Blake A., Magnuson, Jon K., Henrissat, Bernard, Mortensen, Uffe H., Larsen, Thomas O., de Vries, Ronald P., Grigoriev, Igor V., Machida, Masayuki, Baker, Scott E., Andersen, Mikael R.

“…Section Flavi encompasses both harmful and beneficial Aspergillus species, such as Aspergillus oryzae, used in food fermentation and enzyme production, and…”
Get full text

A comparative genomics study of 23 Aspergillus species from section Flavi by Kjærbølling, Inge, Vesth, Tammi, Frisvad, Jens C., Nybo, Jane L., Theobald, Sebastian, Kildgaard, Sara, Petersen, Thomas Isbrandt, Kuo, Alan, Sato, Atsushi, Lyhne, Ellen K., Kogle, Martin E., Wiebenga, Ad, Kun, Roland S., Lubbers, Ronnie J. M., Mäkelä, Miia R., Barry, Kerrie, Chovatia, Mansi, Clum, Alicia, Daum, Chris, Haridas, Sajeet, He, Guifen, LaButti, Kurt, Lipzen, Anna, Mondo, Stephen, Pangilinan, Jasmyn, Riley, Robert, Salamov, Asaf, Simmons, Blake A., Magnuson, Jon K., Henrissat, Bernard, Mortensen, Uffe H., Larsen, Thomas O., de Vries, Ronald P., Grigoriev, Igor V., Machida, Masayuki, Baker, Scott E., Andersen, Mikael R.

“…Section Flavi encompasses both harmful and beneficial Aspergillus species, such as Aspergillus oryzae, used in food fermentation and enzyme production, and…”
Get full text