Search Results - "Venkataramanan, Srivats"

A ubiquitous GC content signature underlies multimodal mRNA regulation by DDX3X by Jowhar, Ziad, Xu, Albert, Venkataramanan, Srivats, Dossena, Francesco, Hoye, Mariah L, Silver, Debra L, Floor, Stephen N, Calviello, Lorenzo

“…The road from transcription to protein synthesis is paved with many obstacles, allowing for several modes of post-transcriptional regulation of gene…”
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DDX3X and DDX3Y are redundant in protein synthesis by Venkataramanan, Srivats, Gadek, Margaret, Calviello, Lorenzo, Wilkins, Kevin, Floor, Stephen N

“…DDX3 is a DEAD-box RNA helicase that regulates translation and is encoded by the X- and Y-linked paralogs and While DDX3X is ubiquitously expressed in human…”
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DDX3 depletion represses translation of mRNAs with complex 5′ UTRs by Calviello, Lorenzo, Venkataramanan, Srivats, Rogowski, Karol J, Wyler, Emanuel, Wilkins, Kevin, Tejura, Malvika, Thai, Bao, Krol, Jacek, Filipowicz, Witold, Landthaler, Markus, Floor, Stephen N

“…Abstract DDX3 is an RNA chaperone of the DEAD-box family that regulates translation. Ded1, the yeast ortholog of DDX3, is a global regulator of translation,…”
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Determining the impact of stress granule composition on cell survival by Park, Jesslyn, Venkataramanan, Srivats, Liboy-Lugo, José, Blackwell, Virginia K., Floor, Stephen N.

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The chromatin remodeling complex Swi/Snf regulates splicing of meiotic transcripts in Saccharomyces cerevisiae by Venkataramanan, Srivats, Douglass, Stephen, Galivanche, Anoop R, Johnson, Tracy L

“…Despite its relatively streamlined genome, there are important examples of regulated RNA splicing in Saccharomyces cerevisiae, such as splicing of meiotic…”
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The Traffic Jam: Polyamine Prevalence Pauses Protein Production by Venkataramanan, Srivats, Floor, Stephen N.

“…In this issue of Molecular Cell, Ivanov et al. (2018) demonstrate how cells sense metabolite levels and regulate production of their biosynthetic enzymes…”
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Pathogenic DDX3X Mutations Impair RNA Metabolism and Neurogenesis during Fetal Cortical Development by Lennox, Ashley L., Hoye, Mariah L., Jiang, Ruiji, Johnson-Kerner, Bethany L., Suit, Lindsey A., Venkataramanan, Srivats, Sheehan, Charles J., Alsina, Fernando C., Fregeau, Brieana, Aldinger, Kimberly A., Moey, Ching, Lobach, Iryna, Afenjar, Alexandra, Babovic-Vuksanovic, Dusica, Bézieau, Stéphane, Blackburn, Patrick R., Bunt, Jens, Burglen, Lydie, Campeau, Philippe M., Charles, Perrine, Chung, Brian H.Y., Cogné, Benjamin, Curry, Cynthia, D’Agostino, Maria Daniela, Di Donato, Nataliya, Faivre, Laurence, Héron, Delphine, Innes, A. Micheil, Isidor, Bertrand, Keren, Boris, Kimball, Amy, Klee, Eric W., Kuentz, Paul, Küry, Sébastien, Martin-Coignard, Dominique, Mirzaa, Ghayda, Mignot, Cyril, Miyake, Noriko, Matsumoto, Naomichi, Fujita, Atsushi, Nava, Caroline, Nizon, Mathilde, Rodriguez, Diana, Blok, Lot Snijders, Thauvin-Robinet, Christel, Thevenon, Julien, Vincent, Marie, Ziegler, Alban, Dobyns, William, Richards, Linda J., Barkovich, A. James, Floor, Stephen N., Silver, Debra L., Sherr, Elliott H.

“…De novo germline mutations in the RNA helicase DDX3X account for 1%–3% of unexplained intellectual disability (ID) cases in females and are associated with…”
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The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae by Neves, Lauren T, Douglass, Stephen, Spreafico, Roberto, Venkataramanan, Srivats, Kress, Tracy L, Johnson, Tracy L

“…In eukaryotes, a dynamic ribonucleic protein machine known as the spliceosome catalyzes the removal of introns from premessenger RNA (pre-mRNA). Recent studies…”
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The chromatin remodeling complex SWI/SNF is a master regulator of meiotic splicing in Saccharomyces cerevisiae by Venkataramanan, Srivats, Douglass, Stephen, Galivanche, Anoop Raj, Johnson, Tracy

“…Abstract only Despite its relatively streamlined genome, there are important examples of regulated RNA splicing in Saccharomyces cerevisiae . One of the most…”
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Chromatin-remodeling SWI/SNF complex regulates coenzyme Q6 synthesis and a metabolic shift to respiration in yeast by Awad, Agape M., Venkataramanan, Srivats, Nag, Anish, Galivanche, Anoop Raj, Bradley, Michelle C., Neves, Lauren T., Douglass, Stephen, Clarke, Catherine F., Johnson, Tracy L.

“…Despite its relatively streamlined genome, there are many important examples of regulated RNA splicing in Saccharomyces cerevisiae. Here, we report a role for…”
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Control of ribosomal protein synthesis by the Microprocessor complex by Jiang, Xuan, Prabhakar, Amit, Van der Voorn, Stephanie M, Ghatpande, Prajakta, Celona, Barbara, Venkataramanan, Srivats, Calviello, Lorenzo, Lin, Chuwen, Wang, Wanpeng, Black, Brian L, Floor, Stephen N, Lagna, Giorgio, Hata, Akiko

“…Ribosome biogenesis in eukaryotes requires the coordinated production and assembly of 80 ribosomal proteins and four ribosomal RNAs (rRNAs), and its rate must…”
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Nutrient sensing and mitochondrial coenzyme Q biosynthesis: Are they connected by a phosphatase? by Awad, Agape M., Venkataramanan, Srivats, Nag, Anish, Bradley, Michelle C., Galivanche, Anoop R., Johnson, Tracy L., Clarke, Catherine F.

“…Abstract only Coenzyme Q (also termed ubiquinone or Q) is an electron carrier in the mitochondrial respiratory chain that functions as an essential component…”
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Nutrient sensing and mitochondrial Coenzyme Q biosynthesis: Are they connected by a phosphatase? by Awad, Agape M., Venkataramanan, Srivats, Nag, Anish, Galivanche, Anoop R., Bradley, Michelle C., Neves, Lauren, Douglass, Stephen, Johnson, Tracy L., Clarke, Catherine F.

“…Coenzyme Q (also termed ubiquinone or Q) is an electron carrier in the mitochondrial respiratory chain that functions as an essential component in energy…”
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The SWI/SNF Complex Regulates Splicing Outcomes to Determine Cell Fate in Response to Environmental Cues in Saccharomyces cerevisiae by Venkataramanan, Srivats

“…Despite its relatively streamlined genome, there are important examples of regulated RNA splicing in Saccharomyces cerevisiae. Here we show crucial roles for…”
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Autoregulation of SUS1: a splicing dependent regulation of histone H2B ubiquitination by Hossain, Munshi Azad, Venkataramanan, Srivats, Johnson, Tracy L

“…Abstract only Pre‐messenger RNA splicing is an underappreciated mechanism for regulating gene expression in yeast ( Saccharomyces cerevisiae ), likely due to…”
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Chromatin-remodeling SWI/SNF complex regulates coenzyme Q 6 synthesis and a metabolic shift to respiration in yeast by Awad, Agape M, Venkataramanan, Srivats, Nag, Anish, Galivanche, Anoop Raj, Bradley, Michelle C, Neves, Lauren T, Douglass, Stephen, Clarke, Catherine F, Johnson, Tracy L

“…Despite its relatively streamlined genome, there are many important examples of regulated RNA splicing in Here, we report a role for the chromatin remodeler…”
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