Search Results - "Vendrami, David L.J."

RAD sequencing sheds new light on the genetic structure and local adaptation of European scallops and resolves their demographic histories by Vendrami, David L. J., De Noia, Michele, Telesca, Luca, Handal, William, Charrier, Grégory, Boudry, Pierre, Eberhart-Phillips, Luke, Hoffman, Joseph I.

“…Recent developments in genomics are advancing our understanding of the processes shaping population structure in wild organisms. In particular, reduced…”
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Development of SNP parentage assignment in the Portuguese oyster Crassostrea angulata by V. Vu, Sang, Premachandra, H.K.A., O’Connor, Wayne, Nguyen, Ngoc T.H., Dove, Michael, Van Vu, In, Le, Tuan Son, Vendrami, David L.J., Knibb, Wayne

“…•Optimized parameters in reconstruction of pedigree assignment in the Portuguese oyster.•Successful evaluation of parentage assignment using SNPs markers in…”
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Deciphering mollusc shell production: the roles of genetic mechanisms through to ecology, aquaculture and biomimetics by Clark, Melody S., Peck, Lloyd S., Arivalagan, Jaison, Backeljau, Thierry, Berland, Sophie, Cardoso, Joao C. R., Caurcel, Carlos, Chapelle, Gauthier, De Noia, Michele, Dupont, Sam, Gharbi, Karim, Hoffman, Joseph I., Last, Kim S., Marie, Arul, Melzner, Frank, Michalek, Kati, Morris, James, Power, Deborah M., Ramesh, Kirti, Sanders, Trystan, Sillanpää, Kirsikka, Sleight, Victoria A., Stewart‐Sinclair, Phoebe J., Sundell, Kristina, Telesca, Luca, Vendrami, David L. J., Ventura, Alexander, Wilding, Thomas A., Yarra, Tejaswi, Harper, Elizabeth M.

“…ABSTRACT Most molluscs possess shells, constructed from a vast array of microstructures and architectures. The fully formed shell is composed of calcite or…”
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Heterogeneous Genomic Divergence Landscape in Two Commercially Important European Scallop Species by Vendrami, David L J, Hoffman, Joseph I, Wilding, Craig S

“…Two commercially important scallop species of the genus are found in Europe: the north Atlantic and the Mediterranean whose distributions abut at the…”
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Genetic parentage reveals the (un)natural history of Central Valley hatchery steelhead by Goetz, Laura C., Nuetzel, Hayley, Vendrami, David L. J., Beulke, Anne K., Anderson, Eric C., Garza, John Carlos, Pearse, Devon E.

“…Populations composed of individuals descended from multiple distinct genetic lineages often feature significant differences in phenotypic frequencies. We…”
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Experimental validation of in silico predicted RAD locus frequencies using genomic resources and short read data from a model marine mammal by Vendrami, David L J, Forcada, Jaume, Hoffman, Joseph I

“…Restriction site-associated DNA sequencing (RADseq) has revolutionized the study of wild organisms by allowing cost-effective genotyping of thousands of loci…”
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Genotyping by sequencing reveals contrasting patterns of population structure, ecologically mediated divergence, and long‐distance dispersal in North American palms by Klimova, Anastasia, Ortega‐Rubio, Alfredo, Vendrami, David L. J., Hoffman, Joseph I.

“…Comparative studies can provide powerful insights into processes that affect population divergence and thereby help to elucidate the mechanisms by which…”
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Detailed insights into pan‐European population structure and inbreeding in wild and hatchery Pacific oysters (Crassostrea gigas) revealed by genome‐wide SNP data by Vendrami, David L. J., Houston, Ross D., Gharbi, Karim, Telesca, Luca, Gutierrez, Alejandro P., Gurney‐Smith, Helen, Hasegawa, Natsuki, Boudry, Pierre, Hoffman, Joseph I.

“…Cultivated bivalves are important not only because of their economic value, but also due to their impacts on natural ecosystems. The Pacific oyster…”
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Sweepstake reproductive success and collective dispersal produce chaotic genetic patchiness in a broadcast spawner by Vendrami, David L J, Peck, Lloyd S, Clark, Melody S, Eldon, Bjarki, Meredith, Michael, Hoffman, Joseph I

“…A long-standing paradox of marine populations is chaotic genetic patchiness (CGP), temporally unstable patterns of genetic differentiation that occur below the…”
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Genome‐wide insights into introgression and its consequences for genome‐wide heterozygosity in the Mytilus species complex across Europe by Vendrami, David L. J., De Noia, Michele, Telesca, Luca, Brodte, Eva‐Maria, Hoffman, Joseph I.

“…The three mussel species comprising the Mytilus complex are widespread across Europe and readily hybridize when they occur in sympatry, resulting in a mosaic…”
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Signatures of Selection on Mitonuclear Integrated Genes Uncover Hidden Mitogenomic Variation in Fur Seals by Vendrami, David L J, Gossmann, Toni I, Chakarov, Nayden, Paijmans, Anneke J, Litzke, Vivienne, Eyre-Walker, Adam, Forcada, Jaume, Hoffman, Joseph I

“…Abstract Nuclear copies of mitochondrial genes (numts) are commonplace in vertebrate genomes and have been characterized in many species. However, relatively…”
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Mytilus trossulus introgression and consequences for shell traits in longline cultivated mussels by Michalek, Kati, Vendrami, David L. J., Bekaert, Michaël, Green, David H., Last, Kim S., Telesca, Luca, Wilding, Thomas A., Hoffman, Joseph I.

“…Mussels belonging to the Mytilus species complex (M. edulis, ME; M. galloprovincialis, MG; and M. trossulus, MT) often occur in sympatry, facilitating…”
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Low heritability and high phenotypic plasticity of salivary cortisol in response to environmental heterogeneity in a wild pinniped by Nagel, Rebecca, Kaiser, Sylvia, Stainfield, Claire, Toscani, Camille, Fox‐Clarke, Cameron, Paijmans, Anneke J., Costa Castro, Camila, Vendrami, David L. J., Forcada, Jaume, Hoffman, Joseph I.

“…Individuals are unique in how they interact with and respond to their environment. Correspondingly, unpredictable challenges or environmental stressors often…”
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RAD sequencing resolves fine-scale population structure in a benthic invertebrate: implications for understanding phenotypic plasticity by Vendrami, David L. J., Telesca, Luca, Weigand, Hannah, Weiss, Martina, Fawcett, Katie, Lehman, Katrin, Clark, M. S., Leese, Florian, McMinn, Carrie, Moore, Heather, Hoffman, Joseph I.

“…The field of molecular ecology is transitioning from the use of small panels of classical genetic markers such as microsatellites to much larger panels of…”
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Population Connectivity Predicts Vulnerability to White-Nose Syndrome in the Chilean Myotis ( Myotis chiloensis ) - A Genomics Approach by Lilley, Thomas M, Sävilammi, Tiina, Ossa, Gonzalo, Blomberg, Anna S, Vasemägi, Anti, Yung, Veronica, Vendrami, David L J, Johnson, Joseph S

“…Despite its peculiar distribution, the biology of the southernmost bat species in the world, the Chilean myotis ( ), has garnered little attention so far. The…”
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Population Genetic Structure is Unrelated to Shell Shape, Thickness and Organic Content in European Populations of the Soft-Shell Clam Mya Arenaria by De Noia, Michele, Telesca, Luca, Vendrami, David L J, Gokalp, Hatice K, Charrier, Grégory, Harper, Elizabeth M, Hoffman, Joseph I

“…The soft-shell clam is one of the most ancient invaders of European coasts and is present in many coastal ecosystems, yet little is known about its genetic…”
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Mining the transcriptomes of four commercially important shellfish species for single nucleotide polymorphisms within biomineralization genes by Vendrami, David L.J., Shah, Abhijeet, Telesca, Luca, Hoffman, Joseph I.

“…Transcriptional profiling not only provides insights into patterns of gene expression, but also generates sequences that can be mined for molecular markers,…”
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