Search Results - "Vasylyeva, Tetyana I"

Scalable gradients enable Hamiltonian Monte Carlo sampling for phylodynamic inference under episodic birth-death-sampling models by Shao, Yucai, Magee, Andrew F, Vasylyeva, Tetyana I, Suchard, Marc A

“…Birth-death models play a key role in phylodynamic analysis for their interpretation in terms of key epidemiological parameters. In particular, models with…”
Get full text

Will the Russian war in Ukraine unleash larger epidemics of HIV, TB and associated conditions and diseases in Ukraine? by Friedman, Samuel R, Smyrnov, Pavlo, Vasylyeva, Tetyana I

“…Abstract The Russian war in Ukraine poses many risks for the spread of HIV, TB and associated conditions, including possible increases in the numbers of people…”
Get full text

Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts by Magee, Andrew F, Höhna, Sebastian, Vasylyeva, Tetyana I, Leaché, Adam D, Minin, Vladimir N

“…Birth-death processes have given biologists a model-based framework to answer questions about changes in the birth and death rates of lineages in a…”
Get full text

Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021 by Yakovleva, Anna, Kovalenko, Ganna, Redlinger, Matthew, Liulchuk, Mariia G., Bortz, Eric, Zadorozhna, Viktoria I., Scherbinska, Alla M., Wertheim, Joel O., Goodfellow, Ian, Meredith, Luke, Vasylyeva, Tetyana I.

“…The use of real-time genomic epidemiology has enabled the tracking of the global spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2),…”
Get full text

Hepatitis C Virus in people with experience of injection drug use following their displacement to Southern Ukraine before 2020 by Yakovleva, Anna, Kovalenko, Ganna, Redlinger, Matthew, Smyrnov, Pavlo, Tymets, Olga, Korobchuk, Anna, Kotlyk, Lyudmyla, Kolodiazieva, Anna, Podolina, Anna, Cherniavska, Svitlana, Antonenko, Petro, Strathdee, Steffanie A, Friedman, Samuel R, Goodfellow, Ian, Wertheim, Joel O, Bortz, Eric, Meredith, Luke, Vasylyeva, Tetyana I

“…Due to practical challenges associated with genetic sequencing in low-resource environments, the burden of hepatitis C virus (HCV) in forcibly displaced people…”
Get full text

Left behind on the path to 90‐90‐90: understanding and responding to HIV among displaced people by Vasylyeva, Tetyana I., Horyniak, Danielle's, Bojorquez, Ietza, Pham, Minh Duc

“…Introduction In 2021, the number of people affected by displacement worldwide reached the highest on record, with an estimated 30.5 million refugees and 4.6…”
Get full text

HIV and hepatitis C Virus in internally displaced people with and without injection drug use experience in the region of Shida Kartli, Georgia by Trovato, Adrian, Gogia, Maka, Aslanikashvili, Ana, Kasrashvili, Tamuna, Kovalenko, Ganna, Yakovleva, Anna, Skaathun, Britt, Vasylyeva, Tetyana I

“…Internally displaced persons (IDPs) can have limited access to HIV and hepatitis C Virus (HCV) treatment and prevention. IDPs comprise > 7% of Georgian…”
Get full text

The role of socio-economic disparities in the relative success and persistence of SARS-CoV-2 variants in New York City in early 2021 by Vasylyeva, Tetyana I, Havens, Jennifer L, Wang, Jade C, Luoma, Elizabeth, Hassler, Gabriel W, Amin, Helly, Di Lonardo, Steve, Taki, Faten, Omoregie, Enoma, Hughes, Scott, Wertheim, Joel O

“…Socio-economic disparities were associated with disproportionate viral incidence between neighborhoods of New York City (NYC) during the first wave of…”
Get full text

Author Correction: Tracking SARS-COV-2 variants using Nanopore sequencing in Ukraine in 2021 by Yakovleva, Anna, Kovalenko, Ganna, Redlinger, Matthew, Liulchuk, Mariia G., Bortz, Eric, Zadorozhna, Viktoria I., Scherbinska, Alla M., Wertheim, Joel O., Goodfellow, Ian, Meredith, Luke, Vasylyeva, Tetyana I.

Get full text

Phylodynamics Helps to Evaluate the Impact of an HIV Prevention Intervention by Vasylyeva, Tetyana I, Zarebski, Alexander, Smyrnov, Pavlo, Williams, Leslie D, Korobchuk, Ania, Liulchuk, Mariia, Zadorozhna, Viktoriia, Nikolopoulos, Georgios, Paraskevis, Dimitrios, Schneider, John, Skaathun, Britt, Pybus, Oliver G, Friedman, Samuel R

“…Assessment of the long-term population-level effects of HIV interventions is an ongoing public health challenge. Following the implementation of a Transmission…”
Get full text

Prevention of early HIV transmissions might be more important in emerging or generalizing epidemics by Vasylyeva, Tetyana I., Friedman, Samuel R., Magiorkinis, Gkikas

Get full text

Challenges posed by COVID‐19 to people who inject drugs and lessons from other outbreaks by Vasylyeva, Tetyana I, Smyrnov, Pavlo, Strathdee, Steffanie, Friedman, Samuel R

“…Introduction In light of the COVID‐19 pandemic, considerable effort is going into identifying and protecting those at risk. Criminalization, stigmatization and…”
Get full text

The molecular epidemiology of multiple zoonotic origins of SARS-CoV-2 by Pekar, Jonathan E, Magee, Andrew, Parker, Edyth, Moshiri, Niema, Izhikevich, Katherine, Havens, Jennifer L, Gangavarapu, Karthik, Malpica Serrano, Lorena Mariana, Crits-Christoph, Alexander, Matteson, Nathaniel L, Zeller, Mark, Levy, Joshua I, Wang, Jade C, Hughes, Scott, Lee, Jungmin, Park, Heedo, Park, Man-Seong, Ching Zi Yan, Katherine, Lin, Raymond Tzer Pin, Mat Isa, Mohd Noor, Noor, Yusuf Muhammad, Vasylyeva, Tetyana I, Garry, Robert F, Holmes, Edward C, Rambaut, Andrew, Suchard, Marc A, Andersen, Kristian G, Worobey, Michael, Wertheim, Joel O

“…Understanding the circumstances that lead to pandemics is important for their prevention. We analyzed the genomic diversity of severe acute respiratory…”
Get full text

Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK by du Plessis, Louis, McCrone, John T, Zarebski, Alexander E, Hill, Verity, Ruis, Christopher, Gutierrez, Bernardo, Raghwani, Jayna, Ashworth, Jordan, Colquhoun, Rachel, Connor, Thomas R, Faria, Nuno R, Jackson, Ben, Loman, Nicholas J, O'Toole, Áine, Nicholls, Samuel M, Parag, Kris V, Scher, Emily, Vasylyeva, Tetyana I, Volz, Erik M, Watts, Alexander, Bogoch, Isaac I, Khan, Kamran, Aanensen, David M, Kraemer, Moritz U G, Rambaut, Andrew, Pybus, Oliver G

“…The United Kingdom's COVID-19 epidemic during early 2020 was one of world's largest and was unusually well represented by virus genomic sampling. We determined…”
Get full text

Integrating molecular epidemiology and social network analysis to study infectious diseases: Towards a socio-molecular era for public health by Vasylyeva, Tetyana I., Friedman, Samuel R., Paraskevis, Dimitrios, Magiorkinis, Gkikas

“…The number of public health applications for molecular epidemiology and social network analysis has increased rapidly since the improvement in computational…”
Get full text

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine by Vasylyeva, Tetyana I., Liulchuk, Mariia, Friedman, Samuel R., Sazonova, Iana, Faria, Nuno R., Katzourakis, Aris, Babii, Nataliia, Scherbinska, Alla, Thézé, Julien, Pybus, Oliver G., Smyrnov, Pavlo, Mbisa, Jean L., Paraskevis, Dimitrios, Hatzakis, Angelos, Magiorkinis, Gkikas

“…Ukraine has one of the largest HIV epidemics in Europe, historically driven by people who inject drugs (PWID). The epidemic showed signs of stabilization in…”
Get full text

Detection and characterization of the SARS-CoV-2 lineage B.1.526 in New York by West, Anthony P., Wertheim, Joel O., Wang, Jade C., Vasylyeva, Tetyana I., Havens, Jennifer L., Chowdhury, Moinuddin A., Gonzalez, Edimarlyn, Fang, Courtney E., Di Lonardo, Steve S., Hughes, Scott, Rakeman, Jennifer L., Lee, Henry H., Barnes, Christopher O., Gnanapragasam, Priyanthi N. P., Yang, Zhi, Gaebler, Christian, Caskey, Marina, Nussenzweig, Michel C., Keeffe, Jennifer R., Bjorkman, Pamela J.

“…Wide-scale SARS-CoV-2 genome sequencing is critical to tracking viral evolution during the ongoing pandemic. We develop the software tool, Variant Database…”
Get full text

Unlocking capacities of genomics for the COVID-19 response and future pandemics by Knyazev, Sergey, Chhugani, Karishma, Sarwal, Varuni, Ayyala, Ram, Singh, Harman, Karthikeyan, Smruthi, Deshpande, Dhrithi, Baykal, Pelin Icer, Comarova, Zoia, Lu, Angela, Porozov, Yuri, Vasylyeva, Tetyana I., Wertheim, Joel O., Tierney, Braden T., Chiu, Charles Y., Sun, Ren, Wu, Aiping, Abedalthagafi, Malak S., Pak, Victoria M., Nagaraj, Shivashankar H., Smith, Adam L., Skums, Pavel, Pasaniuc, Bogdan, Komissarov, Andrey, Mason, Christopher E., Bortz, Eric, Lemey, Philippe, Kondrashov, Fyodor, Beerenwinkel, Niko, Lam, Tommy Tsan-Yuk, Wu, Nicholas C., Zelikovsky, Alex, Knight, Rob, Crandall, Keith A., Mangul, Serghei

“…During the COVID-19 pandemic, genomics and bioinformatics have emerged as essential public health tools. The genomic data acquired using these methods have…”
Get full text

A network intervention that locates and intervenes with recently HIV-infected persons: The Transmission Reduction Intervention Project (TRIP) by Nikolopoulos, Georgios K., Pavlitina, Eirini, Muth, Stephen Q., Schneider, John, Psichogiou, Mina, Williams, Leslie D., Paraskevis, Dimitrios, Sypsa, Vana, Magiorkinis, Gkikas, Smyrnov, Pavlo, Korobchuk, Anya, Vasylyeva, Tetyana I., Skaathun, Britt, Malliori, Melpomeni, Kafetzopoulos, Evangelos, Hatzakis, Angelos, Friedman, Samuel R.

“…Early treatment, soon after infection, reduces HIV transmissions and benefits patients. The Transmission Reduction Intervention Project (TRIP) evaluated a…”
Get full text

Global prevalence and phylogeny of hepatitis B virus (HBV) drug and vaccine resistance mutations by Mokaya, Jolynne, Vasylyeva, Tetyana I., Barnes, Eleanor, Ansari, M. Azim, Pybus, Oliver G., Matthews, Philippa C.

“…Vaccination and anti‐viral therapy with nucleos(t)ide analogues (NAs) are key approaches to reducing the morbidity, mortality and transmission of hepatitis B…”
Get full text